CB293386

Overview
NameCB293386
Unique NameCB293386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8303 contig Csv1_Contig8303:8..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VATM_DICDI (Vacuolar proton translocating ATPase 100 kDa subunit OS=Dictyostelium discoideum GN=vatM PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.882e-33
Identity = 79/215 (36.74%), Postives = 132/215 (61.40%), Query Frame = 3
Query:  147 LFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL-----SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQ-IKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQA 773
            ++RS PMQ+VQ+ + IE+AH TV  LG+LGL+QF D N   + FQR +  ++K+C +M +KL+FF++Q+ K   L      ++ S    D+  D+LE +  +LE+EL ++NAN + LQR ++EL++ + VL K   FF         +   +   +  E +  +PLL + +  ++ +KQ +KLGFI G++  +K   F+R L+R TRGN +++ A
Sbjct:    8 IWRSSPMQMVQLFVQIEAAHDTVDELGKLGLIQFLDDNEHVNLFQRNFVNEVKRCDDMEKKLKFFEDQVKKEPKLQKLLPDNMLSVVDDDSQMDELEGRFDELESELKQVNANQETLQRNYNELIQLRHVLTKDSVFFQ--------ENPNLIEGEGHEHSARSPLLAEDQHVSEVAKQGVKLGFITGVMNTDKMPQFQRSLWRTTRGNNYVKDA 214          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_MOUSE (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Mus musculus GN=Atp6v0a1 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33
Identity = 85/218 (38.99%), Postives = 124/218 (56.88%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTI---ETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF  A         E+  QQ  +  +    + LL   EM       ++LGF+AG++ RE+  +FERM +R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEA---------ELHHQQMADPDLLEESSSLLEPNEMGR--GAPLRLGFVAGVINRERIPTFERMFWRVCRGNVFLRQAEI 209          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_XENLA (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus laevis GN=atp6v0a1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.636e-32
Identity = 85/215 (39.53%), Postives = 121/215 (56.28%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF        A    +E   T        LL   EM       ++LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGENPEVPFPRDIIDLEANFEKIEIELKEINTNQEALKRNFLELTELKFILRKTQQFFDE-----MADPDLLEESST--------LLEPSEMGR--GAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAQI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_XENTR (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Xenopus tropicalis GN=atp6v0a1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 83/215 (38.60%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF              E      +   + LL   EM       ++LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEVKKANISILDTGENPEVPFPRDMIDLEANFEKIEIELKEINTNQEALKRNFLELTELKFILRKTQQFFD-------------EMADPDLLEESSSLLEPSEMGR--GAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_HUMAN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Homo sapiens GN=ATP6V0A1 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 83/215 (38.60%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF   +      +      +  EM   TPL              +LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDE-MADPDLLEESSSLLEPSEMGRGTPL--------------RLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_BOVIN (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Bos taurus GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 83/215 (38.60%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF   +      +      +  EM   TPL              +LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDE-MADPDLLEESSSLLEPSEMGRGTPL--------------RLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_PONAB (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Pongo abelii GN=ATP6V0A1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 84/215 (39.07%), Postives = 121/215 (56.28%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF              +    GE    + LL   EM       ++LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEM----------ADPDLLGE---SSSLLEPSEMGR--GTPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_CHICK (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Gallus gallus GN=ATP6V0A1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 83/215 (38.60%), Postives = 120/215 (55.81%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS LGELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF              E      +   + LL   EM       ++LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELGELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIKKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFD-------------EMADPDLLEESSSLLEPSEMGR--GAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_RAT (V-type proton ATPase 116 kDa subunit a isoform 1 OS=Rattus norvegicus GN=Atp6v0a1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.142e-30
Identity = 82/215 (38.14%), Postives = 119/215 (55.35%), Query Frame = 3
Query:  144 DLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSALTSAAAQQREMESQQTGEMTIETPLLTDKEMSADPSKQIKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            +LFRSE M L Q+ +  E+A+  VS L ELG +QF+DLN + + FQR +  ++++C EM RKLRF ++++ KA I    +          +  DLE     +E EL EIN N + L+R   EL E K +L+K  +FF              E      +   + LL   EM       ++LGF+AG++ RE+  +FERML+R  RGNVFLRQA +
Sbjct:    3 ELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIMDTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFD-------------EMADPDLLEESSSLLEPNEMGR--GAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEI 202          
BLAST of CB293386 vs. ExPASy Swiss-Prot
Match: VPP1_CAEEL (Probable V-type proton ATPase 116 kDa subunit a OS=Caenorhabditis elegans GN=unc-32 PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 81/233 (34.76%), Postives = 128/233 (54.94%), Query Frame = 3
Query:  135 PPMDLFRSEPMQLVQIIIPIESAHLTVSYLGELGLLQFKDLNSEKSPFQRTYAAQIKKCAEMARKLRFFKEQMLKAGIL---SSVKSTTRADNNTDDLEVKLGDLEAELVEINANGDKLQRAHSELVEYKLVLQKAGEFFSSA-------LTSAAAQQ-REMESQQTGEMTIETPLLTDKEMSADPSKQ-------IKLGFIAGLVPREKSMSFERMLFRATRGNVFLRQAVV 779
            P   ++RSE M L Q+ +  ++++  V+ LGELGL+QF+DLN + S FQR Y  ++++C EM RKLR+ + ++ K  I    +             DLE     LE EL E+N N + L++  SEL E K +L+K   FF          L   + ++ R  E ++T       PL+   +M  D + +       ++LGF+AG++ RE+  +FER+L+RA RGNVFLR + +
Sbjct:   12 PQPGIYRSEQMCLAQLYLQSDASYQCVAELGELGLVQFRDLNPDVSSFQRKYVNEVRRCDEMERKLRYLEREIKKDQIPMLDTGENPDAPLPREMIDLEATFEKLENELREVNKNEETLKKNFSELTELKHILRKTQTFFEEVDHDRWRILEGGSGRRGRSTEREET------RPLIDIGDMDDDSAARMSAQAAMLRLGFVAGVIQRERLPAFERLLWRACRGNVFLRTSEI 238          
The following BLAST results are available for this feature:
BLAST of CB293386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VATM_DICDI1.882e-3336.74Vacuolar proton translocating ATPase 100 kDa subun... [more]
VPP1_MOUSE9.342e-3338.99V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_XENLA4.636e-3239.53V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_XENTR7.909e-3238.60V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_HUMAN7.909e-3238.60V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_BOVIN7.909e-3238.60V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_PONAB1.349e-3139.07V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_CHICK1.349e-3138.60V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_RAT1.142e-3038.14V-type proton ATPase 116 kDa subunit a isoform 1 O... [more]
VPP1_CAEEL6.266e-2934.76Probable V-type proton ATPase 116 kDa subunit a OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293386 ID=CB293386; Name=CB293386; organism=Citrus sinensis; type=EST; length=781bp
GCCCATAAGGATCCCCTGNCCGNGCATGTTACTGATAGAGACCTAGCGAG
GAGCTGATTGAACCGAATCAAATCAAATCGGACGGCCAGGAGGAGATGGC
GGAGTTACAATCAGGAGGCGGCGGAGGATGCTGCCCGCCGATGGATCTGT
TCCGGTCGGAGCCGATGCAATTGGTCCAAATCATCATCCCTATTGAATCC
GCTCACCTCACTGTCTCTTACCTCGGCGAACTCGGCTTGCTTCAGTTTAA
AGACTTAAACTCAGAGAAGAGCCCGTTTCAGCGAACTTATGCCGCTCAGA
TAAAAAAATGTGCAGAGATGGCACGCAAGTTACGTTTTTTCAAGGAGCAA
ATGCTAAAGGCAGGTATATTATCTTCAGTAAAGTCTACGACAAGAGCTGA
CAACAATACGGATGACTTAGAGGTAAAACTTGGAGACCTCGAGGCAGAGC
TGGTTGAAATTAATGCAAATGGAGATAAACTGCAACGGGCACACAGTGAG
CTTGTGGAATATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTTTCTTC
TGCACTAACCAGTGCTGCAGCTCAGCAGAGAGAAATGGAATCTCAACAAA
CTGGTGAAATGACTATAGAAACCCCTTTACTTACAGATAAAGAAATGTCA
GCTGATCCATCAAAACAAATAAAATTGGGCTTTATTGCTGGCCTTGTTCC
TAGAGAAAAATCTATGTCATTTGAGAGGATGCTATTTCGTGCTACTAGGG
GCAATGTGTTTTTGAGGCAAGCTGTTGTTGA
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