CB293393

Overview
NameCB293393
Unique NameCB293393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig304 contig Csv1_Contig304:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.143e-48
Identity = 109/180 (60.56%), Postives = 119/180 (66.11%), Query Frame = 1 
Query:  253 MDRQGHGGQPTSMGLVGSGAQVPYGTNPYQQNQMAGGPNPGPAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            MD+Q HG          SGA + YGTNPYQ N M+         T+       +QPG                           +FW NQ++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct:    1 MDQQDHGQ---------SGA-MNYGTNPYQTNPMS--------TTAATVAGGAAQPG------QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 156
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.422e-46
Identity = 101/166 (60.84%), Postives = 109/166 (65.66%), Query Frame = 1 
Query:  301 GSGAQVPYGTNPYQQNQMAGGPNPG--PAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            G  + + YG+NPYQ N M   P     PA   +   Q                                 SFW  Q++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct:    5 GQSSAMNYGSNPYQTNAMTTTPTGSDHPAYHQIHQQQQQQ------------------------LTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 146
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:  508 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            FWANQ QEIE   DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFA+ACEMFILELTLR+W HTEENKRRTLQKNDIAAAI+RTD+FDFLVDI+
Sbjct:   58 FWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDII 152
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:  508 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIV
Sbjct:   60 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 154
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 83/95 (87.37%), Postives = 89/95 (93.68%), Query Frame = 1 
Query:  508 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIV
Sbjct:   47 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 141
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.543e-30
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  505 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIV
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIV 118
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.543e-30
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  505 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIV
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIV 118
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.543e-30
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  505 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIV
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIV 118
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.543e-30
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  505 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIV
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIV 118
[Close]
BLAST of CB293393 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.543e-30
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:  505 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 792
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIV
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIV 118
The following BLAST results are available for this feature:
BLAST of CB293393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC9_ARATH2.143e-4860.56Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH3.422e-4660.84Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC2_ARATH1.030e-4288.42Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC4_ARATH5.114e-4287.37Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC1_ARATH5.114e-4287.37Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC_RAT1.543e-3068.37Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB1.543e-3068.37Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE1.543e-3068.37Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN1.543e-3068.37Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN1.543e-3068.37Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293393 ID=CB293393; Name=CB293393; organism=Citrus sinensis; type=EST; length=794bp
CCGGGCTGAAGGAATTCGGCCCTATGAGTACGTTCCTAAGAAAATTTTAG
AAAAGGAAAAAACTCATTAATCGTTCCGAAAAACAAAAACTAAAAAGAAA
GAGAAAAAAAAATAAAAATCCCTTGATTCTCTCAAAACCCTAAAAGGGGA
AGGTTATATTTTCCAAAATCGGATCTTTTTATTTCATTCTTTCACTGGTT
TCAATCTGGGTGAAGGAGGAAAAAGCAAAAGAATCAGAAAAGTTGGATTA
GTATGGATCGGCAAGGACATGGTGGACAACCCACGTCTATGGGGTTGGTT
GGTAGTGGAGCTCAAGTGCCATACGGCACAAACCCGTATCAACAGAATCA
AATGGCTGGCGGTCCCAACCCTGGCCCAGCTGTCACATCAGTTGGGGCAA
TTCAATCTACTAGTCAGCCAGGAGGTGCTCAGCTTGCACAACACCAACTT
GCCTATCAACAAATTCATCACCAGCAGCAACAGCAGCTTCAGCAACAACT
CCAGTCTTTTTGGGCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATT
TCAAGAATCATAGCCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCC
GATGAGGATGTGAGAATGATATCAGCTGAGGCACCTGTTATATTTGCAAG
GGCATGTGAAATGTTCATCTTGGAATTGACGCTGCGTTCCTGGAACCACA
CTGAAGAGAACAAGAGGAGGACACTCCAAAAGAATGACATTGCGGCAGCA
ATAACTAGGACTGATATATTTGATTTCTTGGTTGACATTGTGCC
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