CB293394

Overview
NameCB293394
Unique NameCB293394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2079 contig Csv1_Contig2079:608..1445. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.847e-67
Identity = 122/159 (76.73%), Postives = 138/159 (86.79%), Query Frame = -3
Query:  360 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 836
            GSAGSKEKVDLLK KFGFDDAFNYK+E DL AALKRCFP+GID+YFENVGGKMLDAVLLNM   GRIAVCGMISQYNLE  EGVHNL  +I KRIR++GF+  D+Y  YPKFLELV+P I+EGK+ YVED+A+GLE AP ALVGLF G+NVGKQ+V +A
Sbjct:  183 GSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVIA 341          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.909e-66
Identity = 122/159 (76.73%), Postives = 136/159 (85.53%), Query Frame = -3
Query:  360 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 836
            GSAGSKEKVDLLK KFGFDDAFNYK+E DL AALKRCFP GIDIYFENVGGKMLDAVL+NM + GRIAVCGMISQYNLE  EGVHNL  +I KRIR++GF+  D+Y  Y KFLE V+P IREGK+ YVED+A+GLE AP ALVGLF G+NVGKQ+V VA
Sbjct:  185 GSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVA 343          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.688e-30
Identity = 72/160 (45.00%), Postives = 100/160 (62.50%), Query Frame = -3
Query:  360 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPEGVHNLEQLIGKRIRLEGFLAGDYYHLY-PKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 836
            GS GS EK  +  +  G+D  FNYK+E    A  + C P+GIDIYFENVGG+ +DAVL NM L+GRI  CG ISQYN   P  V NL  ++ K + ++GF+  +    Y  ++ E +   I EGK+ Y  D+ +GLE+AP A +G+  G+N GK +V +A
Sbjct:  190 GSVGSDEKFKICLDS-GYDSVFNYKKESPFKALPRLC-PKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKIA 347          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.184e-29
Identity = 68/162 (41.98%), Postives = 94/162 (58.02%), Query Frame = -3
Query:  360 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKPE---GVHNLEQLIGKRIRLEGFLAGDYYHLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLVAVA 836
            G AGS EK+D LK +  FD+A NYK   D+  AL+   P G+D+YF+NVGG + DAV+  +    RI VCG IS YN E      G     +LI  +  ++GF+  DY   + +  + +   ++ GK+ Y E I EG EN P A +GLF G N GKQL+ V+
Sbjct:  175 GIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVS 336          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 8.671e-27
Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = -3
Query:  369 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP-EGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLV 836
            G+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  + V+L M+  GRIA+CG ISQYN   P     + E +I +++R+EGF+   +   +  K L  ++  + EGK+ Y E I EG E  PAA +G+  G N+GK +V
Sbjct:  171 GTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNTVILQMKTFGRIAICGAISQYNRTGPCPPGPSPEVIIYQQLRMEGFIVTRWQGEVRQKALTDLMNWVSEGKIRYHEYITEGFEKMPAAFMGMLKGDNLGKTIV 327          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.132e-26
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = -3
Query:  378 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNL--EKPEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGK 836
            G+AGS+EKVD LK K GFD AFNYK    L+  LK+  P G D YF+NVGG+  + V+  M+  GR+A+CG IS YN   + P G  + E ++ + IR+EGF+   +   +  K L+ ++  + EGK+ Y E + EG EN PAA + +  G NVGK
Sbjct:  171 GAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGGEFSNTVIRQMKKFGRVAICGAISMYNSTGQLPPG-PSPESVLYQEIRMEGFIFNRWKGEVGQKALKELLTWVLEGKIQYREFVIEGFENMPAAFMRMLKGENVGK 324          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.479e-26
Identity = 71/159 (44.65%), Postives = 98/159 (61.64%), Query Frame = -3
Query:  369 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEK--PEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLV 836
            G+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  +AV+L M+  GRIA+CG ISQYN     P+G    E +I +++R+EGF+   +   +  K L  ++  + EGK+   E + EG E  PAA +G+  G N+GK +V
Sbjct:  171 GTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVILQMKTFGRIAICGAISQYNRTGPCPQGPAP-EVVIYQQLRMEGFIVNRWQGEVRQKALTELMNWVSEGKVQCHEYVTEGFEKMPAAFMGMLKGENLGKTIV 327          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = -3
Query:  369 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNL--EKPEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLV 836
            G+AGS EK+  LK + GFD AFNYK    L+ ALK+  P G D YF+NVGG+ L+ VL  M+  G+IA+CG IS YN   + P G  + E +I K++R+EGF+   +   +  K L  ++  + EGK+ Y E + +G EN PAA + +  G N+GK +V
Sbjct:  171 GAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPG-PSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVV 327          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.295e-26
Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = -3
Query:  369 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYNLEKP-EGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLV 836
            G+AGS EKV  LK K GFD A NYK    L+ ALK   P+G D YF+NVGG+  +  +  M+  GRIA+CG IS YN   P     + E +I K + L+GF+   +   +  K L  ++  + EGK+ Y E + EG EN PAA +GL  G N+GK +V
Sbjct:  171 GTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCYFDNVGGEFSNVAITQMKKFGRIAICGAISVYNRTSPLSPGPSPEIIIFKELHLQGFVVYRWQGEVRQKALRDLLKWVSEGKIQYHEHVTEGFENMPAAFIGLLKGENLGKAIV 327          
BLAST of CB293394 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.252e-25
Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = -3
Query:  369 GSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLNMRLRGRIAVCGMISQYN-LEKPEGVHNLEQLIGKRIRLEGFLAGDYY-HLYPKFLELVIPAIREGKMVYVEDIAEGLENAPAALVGLFTGRNVGKQLV 836
            G+AGS EKV  LK K+GFD AFNYK    L+  LK+  P+G D YF+NVGG+  +AV   M+  GRIA+CG IS YN    P      E +I   +  +GF+   +   +  K L  ++  + EGK+ Y E I EG EN PAA +G+  G N+GK +V
Sbjct:  171 GAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGGEFSNAVTSQMKKFGRIAICGAISTYNRTGPPPPGPPPEVVIYNELCFQGFIVTRWQGEVRQKALRDLLKWVSEGKIQYHEHITEGFENMPAAFMGMLKGENLGKAIV 327          
The following BLAST results are available for this feature:
BLAST of CB293394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2_ARATH3.847e-6776.73Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.909e-6676.73Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO1.688e-3045.00Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YFMJ_BACSU3.184e-2941.98Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_RAT8.671e-2744.94Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_RABIT1.132e-2644.23Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_MOUSE1.479e-2644.65Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_CAVPO3.295e-2643.40Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_BOVIN3.295e-2643.67Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG1.252e-2543.67Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293394 ID=CB293394; Name=CB293394; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTTTTTTTTTGGCTGTAATTTGTTCTTCATTAATCTTCCTCTT
GGACCACCTGTCCTTACAAAGACACAATTGATATTCTAATATTTATCAAT
GAGGTATCCTAAAAGATACTTTGATCTTATCCCTCAAATGTTCCAATCAT
TATCTCAATATCTTGGAAAAGAAAAAAAATTCCTTCAATGCATCCACTTA
AGTTCTTGTCTGAATCCAAATTATTTGACACTTCACACACAGAACAATCC
AATACAATTACTAAACGAGGATAGTTCATATTAACACATGTAAACATTTT
TAACCGGACAATGGATTCAGTCACATATTCCCAGCTCATCCATATTGGCT
TTTGTATTAAGCAACTGCAACTAGCTGCTTGCCGACGTTCCGGCCAGTGA
AGAGCCCGACAAGGGCTGCAGGAGCATTCTCGAGTCCTTCGGCTATGTCT
TCCACATACACCATCTTTCCTTCTCTGATTGCAGGAATGACCAGTTCCAA
GAATTTCGGATAGAGGTGATAGTAATCACCAGCTAGAAATCCTTCCAGGC
GAATCCGTTTCCCGATCAGTTGCTCTAAGTTGTGTACGCCTTCAGGTTTT
TCCAGGTTGTACTGCGAGATCATACCGCATACCGCAATGCGGCCCCGGAG
CCTCATGTTGAGTAGCACTGCGTCCAGCATCTTTCCCCCAACGTTTTCGA
AATATATGTCGATTCCTTGAGGGAAGCATCTTTTGAGTGCTGCATCCAAG
TCTGGCTCTTGCTTGTAGTTAAAAGCATCATCAAATCCAAACTTGTTCTT
CAACAAATCGACCTTTTCTTTGCTTCCAGCACTTCCAA
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