CB293395

Overview
NameCB293395
Unique NameCB293395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2079 contig Csv1_Contig2079:25..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 357.836 bits (917), Expect = 3.661e-98
Identity = 175/241 (72.61%), Postives = 205/241 (85.06%), Query Frame = 1
Query:   49 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPS-FVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTA-PQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLN 765
            +NK+VI  ++V+GFPKESD   T+ +++L+V EGSK +VL+KNLYLSCDPYMR RM K D  S    ++ PG+PI GYGV++V++S HP+Y K DL+WG  GWEEYS++T    +  KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPKKGE VYVSAASGAVGQLVGQFAK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYK+E DL AALKRCFP+GID+YFENVGGKMLDAVLLN
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMYFENVGGKMLDAVLLN 242          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.948e-95
Identity = 169/242 (69.83%), Postives = 201/242 (83.06%), Query Frame = 1
Query:   49 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLD--RPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTA-PQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLN 765
            +NK+VIL +YV+GFP ESD   T+ +++L+V EG+ ++VL+KNLYLSCDPYMR RM K D    +   ++ PG+PI GYGV+++++S HP+Y K DL+WG   WEEYS++T       KIQHTDVPLSYYTG+LGMPG+TAYAG YEVCSPK+GE VYVSAASGAVGQLVGQ AK+ GCYVVGSAGSKEKVDLLK KFGFDDAFNYK+E DL AALKRCFP GIDIYFENVGGKMLDAVL+N
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVN 244          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.010e-45
Identity = 104/238 (43.70%), Postives = 144/238 (60.50%), Query Frame = 1
Query:   49 SNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVL-DSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            S +++ L+    G P   D +  +    + V E  +  VL+K LY+S DPYMR RM   D  S+V+ F   + ++G  +A+V+ D  H    K D+V G+  W+E+S V+   L  KI  +  P S Y GILGM G+TAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK +  FD+A NYK   D+  AL+   P G+D+YF+NVGG + DAV+
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAVSESALR-KIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVYFDNVGGPISDAVM 232          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.279e-42
Identity = 109/248 (43.95%), Postives = 143/248 (57.66%), Query Frame = 1
Query:   46 LSNKRVILSNYV---TGFPKESD-MKITSGSIKLKVAEGSKDT-VLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHT-DVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLLN 765
            +SN  VI+  Y+    G+P   + +        L+ A+  ++T VLLKN+Y S DPY+R RM      S++     G+P     VAKV+ ST   Y     V   +GWEEY+ V+   L  L  I +   +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK  G +VVGS GS EK  +  +  G+D  FNYK+E     AL R  P+GIDIYFENVGG+ +DAVL N
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPF-KALPRLCPKGIDIYFENVGGETMDAVLEN 247          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 6.347e-42
Identity = 99/241 (41.08%), Postives = 138/241 (57.26%), Query Frame = 1
Query:   37 QEPLSNKRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLLIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            Q+   N+R +L++   G P   + ++        VA   +  VLL+ +YLS DPYMR RMS  D PS+      G  + G  V++V++S HP+Y   D V G +GW++Y + +   L+    H   P S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD   ++  +   +   K C P+GIDIY+ENVGGK+ DAVL
Sbjct:    3 QQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYDISSGDDLVKLGDHPQNP-SWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC-PKGIDIYYENVGGKVFDAVL 235          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.083e-41
Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 1
Query:   55 KRVILSNYVTGFPKESDMKITSGSIKLKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            K   L  +  G P +SD ++ +    +++   +   VLL+ L+LS DPYMR    +L           G+ + G  VA+V++S +P +    LV   +GW  +S+    QL  L+      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK K GFD AFNYK    L+  LK+  P G D YF+NVGG+  + V+
Sbjct:    5 KNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCYFDNVGGEFSNTVI 227          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.483e-40
Identity = 104/237 (43.88%), Postives = 137/237 (57.81%), Query Frame = 1
Query:   67 LSNYVTGFPKESDMKITSGSIKLKVAEG---SKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQLL-IKIQHTD-VPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVLL 762
            L  +  GFP       T G+ +LK  E    +   VLL+ L+LS DPYMR    KL           G+ + G  VA+V++S +  + K  +V    GW  +S+     L  + ++  D +PLS   G +GMPG+TAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K GFD AFNYK    L+ AL+   P G D YF+NVGG+  +AV+L
Sbjct:    9 LKKHFEGFP-------TDGNFELKTTELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCYFDNVGGEFSNAVIL 228          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 5.029e-39
Identity = 98/234 (41.88%), Postives = 132/234 (56.41%), Query Frame = 1
Query:   67 LSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            L  +  G+P  SD ++ +  +  LK  E     VLL+ L+L+ DPYMR    +L           G+ + G  VAKV++S +    K  +V  S GW  +S+     L  L+      +PLS   G +GMPG+TAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+  P G D YF+NVGG+  + V+
Sbjct:    9 LKKHFVGYPTNSDFELKTAELPPLKNGE-----VLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVI 227          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.029e-39
Identity = 101/234 (43.16%), Postives = 134/234 (57.26%), Query Frame = 1
Query:   67 LSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAVL 759
            L  +  G P +SD ++ +  +  LK  E     VLL+ L+LS DPYMR    +L           G  + G  VA+V++S +  +    +V   +GW  + +     L  L+      +PLS   G +GMPG+TAY GL EVC  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+  P G D YF+NVGG+ L+ VL
Sbjct:    9 LKKHFQGKPTQSDFELKTVELPPLKNGE-----VLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVL 227          
BLAST of CB293395 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.260e-38
Identity = 98/233 (42.06%), Postives = 135/233 (57.94%), Query Frame = 1
Query:   67 LSNYVTGFPKESDMKITSGSIK-LKVAEGSKDTVLLKNLYLSCDPYMRWRMSKLDRPSFVDSFHPGEPINGYGVAKVLDSTHPNYAKDDLVWGSTGWEEYSLVTAPQL--LIKIQHTDVPLSYYTGILGMPGVTAYAGLYEVCSPKKGEYVYVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVDLLKNKFGFDDAFNYKQEPDLDAALKRCFPQGIDIYFENVGGKMLDAV 756
            L  +  G+P  S+ ++ +  +  LK  E     VLL+ L+L+ DPYMR    KL           G+ + G  VA+V++S +  +    +V    GW  +S+     L  L+      +PLS   G +GMPG+TAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK K+GFD AFNYK    L+  LK+  P+G D YF+NVGG+  +AV
Sbjct:    9 LKKHFVGYPTPSNFELKTVELPPLKNGE-----VLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCYFDNVGGEFSNAV 226          
The following BLAST results are available for this feature:
BLAST of CB293395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
P2_ARATH3.661e-9872.61Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH4.948e-9569.83Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU8.010e-4543.70Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YKM8_SCHPO1.279e-4243.95Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI6.347e-4241.08Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_RABIT1.083e-4141.77Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
PTGR1_MOUSE3.483e-4043.88Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_HUMAN5.029e-3941.88Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_CAVPO5.029e-3943.16Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_PIG3.260e-3842.06Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ab12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ab12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293395 ID=CB293395; Name=CB293395; organism=Citrus sinensis; type=EST; length=767bp
GCCCGTTGAAGAAACTGAGAAACAATGGCGGCTGAACAAGAACCTTTGAG
CAATAAGCGGGTGATTCTGAGCAACTATGTGACAGGTTTTCCAAAAGAAT
CAGACATGAAGATAACAAGTGGATCAATAAAGCTGAAGGTAGCAGAGGGT
TCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCTTGTGATCCTTA
CATGCGATGGCGTATGAGCAAGCTTGATAGACCTTCTTTTGTTGATTCAT
TCCATCCTGGTGAGCCTATAAATGGTTATGGGGTAGCTAAAGTTTTGGAT
TCTACACATCCAAATTATGCAAAAGATGACTTGGTTTGGGGCTCCACCGG
GTGGGAGGAGTACAGTCTCGTTACAGCCCCACAGCTTTTGATTAAAATTC
AGCATACAGATGTGCCCCTTTCATACTATACTGGAATCCTTGGTATGCCT
GGTGTGACTGCATACGCTGGTTTATACGAAGTTTGCTCTCCGAAGAAAGG
TGAGTACGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTTGTTG
GCCAATTTGCAAAATTGGCTGGTTGCTATGTTGTTGGAAGTGCTGGAAGC
AAAGAAAAGGTCGATTTGTTGAAGAACAAGTTTGGATTTGATGATGCTTT
TAACTACAAGCAAGAGCCAGACTTGGATGCAGCACTCAAAAGATGCTTCC
CTCAAGGAATCGACATATATTTCGAAAACGTTGGGGGAAAGATGCTGGAC
GCAGTGCTACTCAACAT
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