CB293407

Overview
NameCB293407
Unique NameCB293407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig307 contig Csv1_Contig307:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293407 vs. ExPASy Swiss-Prot
Match: ZRAB2_CHICK (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.148e-15
Identity = 51/160 (31.87%), Postives = 63/160 (39.38%), Query Frame = 3
Query:  114 DGDWMCPNTRSVM*YCCSNVNFAFRGVCNRCXXXXXXXXXXXXXXXXXXXXXXXXNESGSQGRQIGA-----ATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEFGNLKKKFRAK 578
            DGDW+CP+ +      C NVNFA R  CNRC                            + G +IG      + GLF  NDW C  CGN+NWA+R++CN+CNT K    E                                    YDEFG  KKK+R K
Sbjct:   10 DGDWICPDKK------CGNVNFARRTSCNRCGREKTTEAKMMK----------------AGGTEIGKTLAEKSRGLFSANDWQCKTCGNVNWARRSECNMCNTPKYAKLE----------ERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137          
BLAST of CB293407 vs. ExPASy Swiss-Prot
Match: ZRAB2_RAT (Zinc finger Ran-binding domain-containing protein 2 OS=Rattus norvegicus GN=Zranb2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 50/160 (31.25%), Postives = 62/160 (38.75%), Query Frame = 3
Query:  114 DGDWMCPNTRSVM*YCCSNVNFAFRGVCNRCXXXXXXXXXXXXXXXXXXXXXXXXNESGSQGRQIGA-----ATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEFGNLKKKFRAK 578
            DGDW+CP+ +      C NVNFA R  CNRC                            + G +IG      + GLF  NDW C  C N+NWA+R++CN+CNT K    E                                    YDEFG  KKK+R K
Sbjct:   10 DGDWICPDKK------CGNVNFARRTSCNRCGREKTTEAKMMK----------------AGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLE----------ERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137          
BLAST of CB293407 vs. ExPASy Swiss-Prot
Match: ZRAB2_PONAB (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 50/160 (31.25%), Postives = 62/160 (38.75%), Query Frame = 3
Query:  114 DGDWMCPNTRSVM*YCCSNVNFAFRGVCNRCXXXXXXXXXXXXXXXXXXXXXXXXNESGSQGRQIGA-----ATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEFGNLKKKFRAK 578
            DGDW+CP+ +      C NVNFA R  CNRC                            + G +IG      + GLF  NDW C  C N+NWA+R++CN+CNT K    E                                    YDEFG  KKK+R K
Sbjct:   10 DGDWICPDKK------CGNVNFARRTSCNRCGREKTTEAKMMK----------------AGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLE----------ERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137          
BLAST of CB293407 vs. ExPASy Swiss-Prot
Match: ZRAB2_PIG (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 50/160 (31.25%), Postives = 62/160 (38.75%), Query Frame = 3
Query:  114 DGDWMCPNTRSVM*YCCSNVNFAFRGVCNRCXXXXXXXXXXXXXXXXXXXXXXXXNESGSQGRQIGA-----ATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEFGNLKKKFRAK 578
            DGDW+CP+ +      C NVNFA R  CNRC                            + G +IG      + GLF  NDW C  C N+NWA+R++CN+CNT K    E                                    YDEFG  KKK+R K
Sbjct:   10 DGDWICPDKK------CGNVNFARRTSCNRCGREKTTEAKMMK----------------AGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLE----------ERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137          
BLAST of CB293407 vs. ExPASy Swiss-Prot
Match: ZRAB2_MOUSE (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 50/160 (31.25%), Postives = 62/160 (38.75%), Query Frame = 3
Query:  114 DGDWMCPNTRSVM*YCCSNVNFAFRGVCNRCXXXXXXXXXXXXXXXXXXXXXXXXNESGSQGRQIGA-----ATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEFGNLKKKFRAK 578
            DGDW+CP+ +      C NVNFA R  CNRC                            + G +IG      + GLF  NDW C  C N+NWA+R++CN+CNT K    E                                    YDEFG  KKK+R K
Sbjct:   10 DGDWICPDKK------CGNVNFARRTSCNRCGREKTTEAKMMK----------------AGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLE----------ERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137          
BLAST of CB293407 vs. ExPASy Swiss-Prot
Match: ZRAB2_HUMAN (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 50/160 (31.25%), Postives = 62/160 (38.75%), Query Frame = 3
Query:  114 DGDWMCPNTRSVM*YCCSNVNFAFRGVCNRCXXXXXXXXXXXXXXXXXXXXXXXXNESGSQGRQIGA-----ATGLFGPNDWSCPMCGNINWAKRTKCNICNTNKPGHNEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDEFGNLKKKFRAK 578
            DGDW+CP+ +      C NVNFA R  CNRC                            + G +IG      + GLF  NDW C  C N+NWA+R++CN+CNT K    E                                    YDEFG  KKK+R K
Sbjct:   10 DGDWICPDKK------CGNVNFARRTSCNRCGREKTTEAKMMK----------------AGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLE----------ERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137          
The following BLAST results are available for this feature:
BLAST of CB293407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ZRAB2_CHICK8.148e-1531.88Zinc finger Ran-binding domain-containing protein ... [more]
ZRAB2_RAT4.044e-1431.25Zinc finger Ran-binding domain-containing protein ... [more]
ZRAB2_PONAB4.044e-1431.25Zinc finger Ran-binding domain-containing protein ... [more]
ZRAB2_PIG4.044e-1431.25Zinc finger Ran-binding domain-containing protein ... [more]
ZRAB2_MOUSE4.044e-1431.25Zinc finger Ran-binding domain-containing protein ... [more]
ZRAB2_HUMAN4.044e-1431.25Zinc finger Ran-binding domain-containing protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293407 ID=CB293407; Name=CB293407; organism=Citrus sinensis; type=EST; length=745bp
GCACGTGGGTTGCGGGTGATGTCAGCGGATTGGATGAAAATTCTAGGGAT
GTTAATGGGTTTGCTGGACGAGGTAGAGGTCGGGGTGATGCTGTGGGGAA
AACTTGGCAACAGGATGGAGACTGGATGTGTCCGAATACAAGGTCTGTGA
TGTGATATTGTTGTTCAAATGTAAATTTTGCATTTCGTGGCGTGTGCAAT
CGTTGTGGAACTGCTCGACCTGTTGGTGGACCGGGAGCTGGGGGAAGAGC
TGGTGGTCGTGGGAGAGGTCGTGCTGGCAATGAATCGGGGAGCCAGGGCC
GGCAAATTGGTGCTGCTACTGGGCTTTTTGGTCCAAATGATTGGTCTTGT
CCCATGTGTGGTAATATCAACTGGGCAAAGCGAACAAAGTGCAATATCTG
CAACACGAATAAACCTGGTCACAATGAGGGTGGTGTTAGAGGAGGGCGTG
GTGGTGGTTACAAAGAACTTGATGAAGAAGAACTAGAGGAAACGAAGCGA
CGGAGGCGGGAGGCTGAAGCAGATGATGGGGAGTTGTATGATGAGTTTGG
AAATCTCAAGAAAAAGTTTCGTGCTAAGACGCAACAAGTTGAAGCCGCGC
AGGTGCTTCCAGGTGCTGGACGTGCAGGATGGGAGGTTGAGGAACTAGGT
GTGACTGATCGTGATGGGAGAGAGCGAAGCAGAGACAGAGGAAGGGAACG
AGAAGACAGGGGAAGCAACAAGAAGAGGGGCGGTGATGATAGGGA
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