CB293414

Overview
NameCB293414
Unique NameCB293414
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12035 contig Csv1_Contig12035:14..558. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_HEVBR (ATP synthase subunit beta, mitochondrial OS=Hevea brasiliensis GN=ATPB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.406e-13
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYVELKESI SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  511 PGKYVELKESITSFQGVLDGKYDDLPEQSFYMVGG 545          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_MAIZE (ATP synthase subunit beta, mitochondrial OS=Zea mays GN=ATPB PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.222e-13
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYVELKES+ SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  502 PGKYVELKESVKSFQGVLDGKYDDLPEQSFYMVGG 536          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_ORYSJ (ATP synthase subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=ATPB PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.204e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYVELKES+ SFQGVLDGKYDDLPEQSFYMVGG
Sbjct:  501 PGKYVELKESVNSFQGVLDGKYDDLPEQSFYMVGG 535          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_ACTDE (ATP synthase subunit beta, mitochondrial (Fragment) OS=Actinidia deliciosa GN=ATPB PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYV+LKESI SFQGVLDGK+DDLPEQSFYMVGG
Sbjct:  122 PGKYVDLKESITSFQGVLDGKFDDLPEQSFYMVGG 156          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_DAUCA (ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.977e-12
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYVELKE + SFQGVLDGKYDDLPEQSFYM+GG
Sbjct:  496 PGKYVELKECVTSFQGVLDGKYDDLPEQSFYMLGG 530          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_NICPL (ATP synthase subunit beta, mitochondrial OS=Nicotiana plumbaginifolia GN=ATPB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.739e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYV+LKESI SFQGVLDGKYDDL EQSFYMVGG
Sbjct:  509 PGKYVDLKESINSFQGVLDGKYDDLSEQSFYMVGG 543          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBO_ARATH (ATP synthase subunit beta-3, mitochondrial OS=Arabidopsis thaliana GN=At5g08680 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYV+LKE+I SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  508 PGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 542          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBN_ARATH (ATP synthase subunit beta-2, mitochondrial OS=Arabidopsis thaliana GN=At5g08690 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYV+LKE+I SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  505 PGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 539          
BLAST of CB293414 vs. ExPASy Swiss-Prot
Match: ATPBM_ARATH (ATP synthase subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08670 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.631e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = -3
Query:  439 PGKYVELKESIASFQGVLDGKYDDLPEQSFYMVGG 543
            PGKYV+LKE+I SFQG+LDGKYDDL EQSFYMVGG
Sbjct:  505 PGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGG 539          
The following BLAST results are available for this feature:
BLAST of CB293414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ATPBM_HEVBR5.406e-1397.14ATP synthase subunit beta, mitochondrial OS=Hevea ... [more]
ATPBM_MAIZE9.222e-1394.29ATP synthase subunit beta, mitochondrial OS=Zea ma... [more]
ATPBM_ORYSJ1.204e-1294.29ATP synthase subunit beta, mitochondrial OS=Oryza ... [more]
ATPBM_ACTDE3.504e-1291.43ATP synthase subunit beta, mitochondrial (Fragment... [more]
ATPBM_DAUCA5.977e-1288.57ATP synthase subunit beta, mitochondrial OS=Daucus... [more]
ATPBM_NICPL1.739e-1191.43ATP synthase subunit beta, mitochondrial OS=Nicoti... [more]
ATPBO_ARATH8.631e-1185.71ATP synthase subunit beta-3, mitochondrial OS=Arab... [more]
ATPBN_ARATH8.631e-1185.71ATP synthase subunit beta-2, mitochondrial OS=Arab... [more]
ATPBM_ARATH8.631e-1185.71ATP synthase subunit beta-1, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ac10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ac10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293414 ID=CB293414; Name=CB293414; organism=Citrus sinensis; type=EST; length=545bp
TTTTTTGATGCAAATAAGGCCAGTAAATTGCCCCCTTTTATCAAAGGCAT
ATTAGTCAGATGTATTTTCGGTTACCATGAAAAGAAAAGTATCTGATATT
CTCTGAAAATTTGGCAAAAGAAATATACATGTCCGCATTCTTTTTTTTTT
CCCTTATTAAATAACAAGAAAAAAGCAGACTTTAGCAGGAAAGGCCCCAG
TTCTGTTCCTATTTCACACTTTGCAATAACATTAAAACAGAAATAGAAGC
TTCTGGCACATTTGGTCTCAAAAAATGAACATCCCGACGCCGGCGTGGCC
AGCACCACCTAAATTATTGATTTTCGCAGTAATCAAGCTAAAAGCATTGA
AAATGAACAGGGAAGAGACGAGCATGAGATTTGATTAGGCAGCTGATTCC
TTGGCAATCTTCTCGGCCTTGGCAATGACCTCCTCGATGCCTCCAACCAT
GTAAAATGACTGTTCTGGAAGGTCATCATATTTTCCATCCAACACTCCCT
GGAAACTGGCAATGCTCTCCTTCAACTCCACATACTTGCCAGGGG
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