CB293511

Overview
NameCB293511
Unique NameCB293511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293511_ssr82 microsatellite CB293511_ssr82:82..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11921 contig Csv1_Contig11921:283..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 3.386e-76
Identity = 141/192 (73.44%), Postives = 152/192 (79.17%), Query Frame = -1
Query:  249 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGFADAE 824
            TIRHP ELAH+ANNGLDIAVRLL+PI++ FPILSYADFYQLAGVVAVE+TGGPEIPFHPGR DK +PPPEGRLP ATKG DHLRDVFG MGL+DK+IV LSGGHTLGRCHKERSGFEG WT NPLIFDNSYF             LP+DKALL+DP+F P VEK              AHLKLSELGFAD E
Sbjct:   60 TIRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFADKE 251          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 5.407e-74
Identity = 140/192 (72.92%), Postives = 153/192 (79.69%), Query Frame = -1
Query:  252 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGH-MGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGFADA 824
            TI+H  ELAH ANNGLDIAVRLLEPI++QFPI+SYADFYQLAGVVAVE+TGGPE+PFHPGR DK +PPPEGRLP+ATKGSDHLRDVFG  MGLSD++IV LSGGHT+G  HKERSGFEGPWT+NPLIFDNSYF             LPSDKALL D VFRPLVEK              AHLKLSELGFA+A
Sbjct:   59 TIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFAEA 250          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 9.543e-71
Identity = 134/191 (70.16%), Postives = 148/191 (77.49%), Query Frame = -1
Query:  255 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVF-GHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGFAD 824
            T+++P E +H AN GLDIAVRLL+PI+ Q PILSYADFYQLAGVVAVEVTGGPE+PFHPGR DK +PPPEGRLP+AT+GSDHLR VF   MGLSDK+IV LSGGHTLGRCHKERSGFEG WT+NPLIFDNSYF             LPSDKAL+ DP FRPLVEK              AHLKLSELGFA+
Sbjct:   60 TMKNPGEQSHAANAGLDIAVRLLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSAQMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALMADPAFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 250          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.628e-70
Identity = 134/192 (69.79%), Postives = 147/192 (76.56%), Query Frame = -1
Query:  252 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGFADA 824
            T++ P EL+H AN GLDIAVR+LEPI+++ P +SYADFYQLAGVVAVEV+GGP +PFHPGR DK  PPPEGRLP+ATKGSDHLR VFG  MGLSD++IV LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF             LPSDKALL DP FRPLVEK              AHLKLSELGFADA
Sbjct:   59 TMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFRPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 250          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.378e-69
Identity = 133/192 (69.27%), Postives = 146/192 (76.04%), Query Frame = -1
Query:  252 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGFADA 824
            T++ P EL+H AN GLDIAVR+LEPI+++ P +SYADFYQLAGVVAVEV+GGP +PFHPGR DK  PPPEGRLP+ATKGSDHLR VFG  MGLSD++IV LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF             LPSDKALL DP F PLVEK              AHLKLSELGFADA
Sbjct:   59 TMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFCPLVEKYAADEKAFFEDYKEAHLKLSELGFADA 250          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 9.876e-68
Identity = 130/192 (67.71%), Postives = 146/192 (76.04%), Query Frame = -1
Query:  252 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGFADA 824
            T+R   E AH AN+G+ IA+RLL+PI +QFP +S+ADF+QLAGVVAVEVTGGP+IPFHPGR DK  PPPEGRLP+ATKG DHLRDVF   MGLSDK+IV LSG HTLGRCHK+RSGFEG WT+NPLIFDNSYF             L SDKALL+DPVFRPLVEK              AH+KLSELGFADA
Sbjct:   59 TMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFADA 250          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.384e-53
Identity = 108/188 (57.45%), Postives = 128/188 (68.09%), Query Frame = -1
Query:  261 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGF 824
            +IR P E +H AN G+ IA+ LLEP++Q+ P ++YAD YQLAGVVAVEVTGGP I + PGR D SD P EGRLP+A KG+ HLR+VF  MGLSDK+IV LSGGHTLG+   ERSGF+G WT +PL FDNSYF             LP+DKAL+EDP FR  VE               +H KLSELGF
Sbjct:   58 SIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELGF 245          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.384e-53
Identity = 108/188 (57.45%), Postives = 128/188 (68.09%), Query Frame = -1
Query:  261 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGF 824
            +IR P E +H AN G+ IA+ LLEP++Q+ P ++YAD YQLAGVVAVEVTGGP I + PGR D SD P EGRLP+A KG+ HLR+VF  MGLSDK+IV LSGGHTLG+   ERSGF+G WT +PL FDNSYF             LP+DKAL+EDP FR  VE               +H KLSELGF
Sbjct:   58 SIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELGF 245          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.172e-52
Identity = 109/188 (57.98%), Postives = 126/188 (67.02%), Query Frame = -1
Query:  261 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGF 824
            +IR+ +E  H +N GL IA+ LLEPI+ + P ++YAD YQLAGVVAVEVTGGP + F PGR D S  P EGRLP+A KG+ HLRD+F  MGLSDK+IV LSGGHTLGR H ERSGFEG WT  PL FDNSYF             LP+DKALLEDP FR  V+               +H KLSELGF
Sbjct:   57 SIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREGRLPDAKKGALHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPSFRRYVDLYARDEDTFFKDYAESHKKLSELGF 244          
BLAST of CB293511 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.410e-52
Identity = 108/188 (57.45%), Postives = 126/188 (67.02%), Query Frame = -1
Query:  261 TIRHPDELAHEANNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYFXXXXXXXXXXXXXLPSDKALLEDPVFRPLVEKXXXXXXXXXXXXXXAHLKLSELGF 824
            +IR+ +E  H AN+GL IA+ L E ++ + P ++YAD YQLAGVVAVEVTGGP+I F PGR D +  P EGRLP+A +G  HLRDVF  MGLSDK+IV LSGGHTLGR H ERSGF+GPWT  PL FDNSYF             LP+DK LLEDP FR LVE               +H KLSELGF
Sbjct:   57 SIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKDSNVCPKEGRLPDAKQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLLEDPEFRRLVELYAKDEDAFFRDYAESHKKLSELGF 244          
The following BLAST results are available for this feature:
BLAST of CB293511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
APX2_ARATH3.386e-7673.44L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_PEA5.407e-7472.92L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX2_ORYSJ9.543e-7170.16L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ1.628e-7069.79L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI1.378e-6969.27L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ARATH9.876e-6867.71L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX3_ORYSJ1.384e-5357.45Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI1.384e-5357.45Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ1.172e-5257.98Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH3.410e-5257.45L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293511 ID=CB293511; Name=CB293511; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTTTTTTTATGCTTAACATGTATCAGAAAGTTTCGCTAATTATT
TCCAGTCACAAAACTAGAACATTGTTTTTGCCACACACACAGCAACACAG
CAAACGCTCATGTGGCAGCTTTTGCTATTTTGATTACATCACATCAACCA
ATTTAAATACAAGGACATGACCAGAAATTTGAGACTTTAGAAGCCACAAT
AAAGTACATGGATAGCCGCATTCAGCTGCTTCATAATTTGATTCATTACT
CAGCATCCGCAAATCCGAGTTCTGAGAGCTTCAAATGAGCTTCAGCGTAA
TCTGCAAAGAAGGCATCCTCATCTGCAGCATATTTTTCAACAAGAGGACG
AAACACTGGGTCCTCGAGAAGAGCCTTGTCTGATGGCAGCTGAAGTAAAC
CTTCTTTCTCTCCACTCAGCAATTCCTTAAAATATGAATTGTCAAAAATA
AGTGGATTGTTAGTCCAGGGTCCTTCAAATCCAGAACGCTCCTTGTGGCA
CCTACCCAATGTATGACCGCCGGATAAAACAACGATTTCCTTATCACTCA
GACCCATGTGGCCGAAGACATCTCTCAGATGGTCAGAACCTTTGGTGGCA
TTTGGCAAGCGACCTTCTGGGGGCGGATCAGATTTGTCCGGTCTTCCAGG
GTGGAAAGGTATTTCAGGCCCTCCGGTAACTTCAACGGCAACAACTCCAG
CCAACTGATAGAAATCAGCGTAGGACAAGATAGGAAACTGCTGCTCGATG
GGCTCCAAAAGCCTGACAGCAATATCAAGACCATTGTTAGCCTCATGAGC
AAGCTCATCTGGGTGCCTGATCGT
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