CB293512

Overview
NameCB293512
Unique NameCB293512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293512_ssr105 microsatellite CB293512_ssr105:105..119. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 345.125 bits (884), Expect = 2.299e-94
Identity = 159/188 (84.57%), Postives = 174/188 (92.55%), Query Frame = 2
Query:  134 KCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            K YP+V +EY+KAV++CKRKLRGLIAEKHCAPI+LRLAWHSAGT+DV TKTGGPFGTIRHP ELAH+ NNGLDIAVRLL+PI++ FPILSYADFYQLAGVVAVE+TGGPEIPFHPGR DK +PPPEGRLP ATKG DHLRDVFG MGL+DK+IV LSGGHTLGRCHKERSGFEG WT NPLIFDNSYF
Sbjct:    4 KSYPEVKEEYKKAVQRCKRKLRGLIAEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYF 191          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 7.653e-90
Identity = 155/190 (81.58%), Postives = 171/190 (90.00%), Query Frame = 2
Query:  131 GKCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGH-MGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            GK YP VS +YQKA+EK KRKLRG IAEK CAP+ILRLAWHSAGT+D  TKTGGPFGTI+H  ELAH  NNGLDIAVRLLEPI++QFPI+SYADFYQLAGVVAVE+TGGPE+PFHPGR DK +PPPEGRLP+ATKGSDHLRDVFG  MGLSD++IV LSGGHT+G  HKERSGFEGPWT+NPLIFDNSYF
Sbjct:    2 GKSYPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYF 191          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.951e-85
Identity = 149/189 (78.84%), Postives = 168/189 (88.89%), Query Frame = 2
Query:  134 KCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVF-GHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            K YP VSDEY  AV K KRKLRGLIAEK+CAP++LRLAWHSAGT+DV+++TGGPFGT+++P E +H  N GLDIAVRLL+PI+ Q PILSYADFYQLAGVVAVEVTGGPE+PFHPGR DK +PPPEGRLP+AT+GSDHLR VF   MGLSDK+IV LSGGHTLGRCHKERSGFEG WT+NPLIFDNSYF
Sbjct:    4 KSYPTVSDEYLAAVGKAKRKLRGLIAEKNCAPLMLRLAWHSAGTFDVSSRTGGPFGTMKNPGEQSHAANAGLDIAVRLLDPIKDQLPILSYADFYQLAGVVAVEVTGGPEVPFHPGRQDKPEPPPEGRLPDATQGSDHLRQVFSAQMGLSDKDIVALSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYF 192          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.067e-83
Identity = 145/189 (76.72%), Postives = 166/189 (87.83%), Query Frame = 2
Query:  134 KCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            K YP VS EYQ+AVEK ++KLR LIAEK CAP++LRLAWHSAGT+DV++KTGGPFGT++ P EL+H  N GLDIAVR+LEPI+++ P +SYADFYQLAGVVAVEV+GGP +PFHPGR DK  PPPEGRLP+ATKGSDHLR VFG  MGLSD++IV LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF
Sbjct:    3 KNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYF 191          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.067e-83
Identity = 145/189 (76.72%), Postives = 166/189 (87.83%), Query Frame = 2
Query:  134 KCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            K YP VS EYQ+AVEK ++KLR LIAEK CAP++LRLAWHSAGT+DV++KTGGPFGT++ P EL+H  N GLDIAVR+LEPI+++ P +SYADFYQLAGVVAVEV+GGP +PFHPGR DK  PPPEGRLP+ATKGSDHLR VFG  MGLSD++IV LSGGHTLGRCHKERSGFEGPWT NPL FDNSYF
Sbjct:    3 KNYPVVSAEYQEAVEKARQKLRALIAEKSCAPLMLRLAWHSAGTFDVSSKTGGPFGTMKTPAELSHAANAGLDIAVRMLEPIKEEIPTISYADFYQLAGVVAVEVSGGPAVPFHPGREDKPAPPPEGRLPDATKGSDHLRQVFGAQMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYF 191          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX1_ARATH (L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis thaliana GN=APX1 PE=1 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.019e-82
Identity = 142/189 (75.13%), Postives = 166/189 (87.83%), Query Frame = 2
Query:  134 KCYPKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFG-HMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            K YP VS++Y+KAVEKC+RKLRGLIAEK+CAPI++RLAWHSAGT+D  ++TGGPFGT+R   E AH  N+G+ IA+RLL+PI +QFP +S+ADF+QLAGVVAVEVTGGP+IPFHPGR DK  PPPEGRLP+ATKG DHLRDVF   MGLSDK+IV LSG HTLGRCHK+RSGFEG WT+NPLIFDNSYF
Sbjct:    3 KNYPTVSEDYKKAVEKCRRKLRGLIAEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYF 191          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.314e-65
Identity = 121/185 (65.41%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  143 PKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            P V  EY   VE+ +R LR LIA K CAPI+LRLAWH AGTYD  TKTGGP G+IR P E +H  N G+ IA+ LLEP++Q+ P ++YAD YQLAGVVAVEVTGGP I + PGR D SD P EGRLP+A KG+ HLR+VF  MGLSDK+IV LSGGHTLG+   ERSGF+G WT +PL FDNSYF
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYF 189          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.314e-65
Identity = 121/185 (65.41%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  143 PKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            P V  EY   VE+ +R LR LIA K CAPI+LRLAWH AGTYD  TKTGGP G+IR P E +H  N G+ IA+ LLEP++Q+ P ++YAD YQLAGVVAVEVTGGP I + PGR D SD P EGRLP+A KG+ HLR+VF  MGLSDK+IV LSGGHTLG+   ERSGF+G WT +PL FDNSYF
Sbjct:    5 PVVDAEYMAEVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKATKTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSSDSPEEGRLPDAKKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYF 189          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.717e-65
Identity = 122/185 (65.95%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  143 PKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            P V  EY + V++ +R LR LI+ K CAPI+LRLAWH AGTYDVNTKTGG  G+IR+ +E  H  N GL IA+ LLEPI+ + P ++YAD YQLAGVVAVEVTGGP + F PGR D S  P EGRLP+A KG+ HLRD+F  MGLSDK+IV LSGGHTLGR H ERSGFEG WT  PL FDNSYF
Sbjct:    4 PVVDAEYLRQVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNTKTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSSVCPREGRLPDAKKGALHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYF 188          
BLAST of CB293512 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.479e-64
Identity = 119/185 (64.32%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  143 PKVSDEYQKAVEKCKRKLRGLIAEKHCAPIILRLAWHSAGTYDVNTKTGGPFGTIRHPDELAHEDNNGLDIAVRLLEPIEQQFPILSYADFYQLAGVVAVEVTGGPEIPFHPGRPDKSDPPPEGRLPNATKGSDHLRDVFGHMGLSDKEIVVLSGGHTLGRCHKERSGFEGPWTNNPLIFDNSYF 697
            P V  EY K + K +R+LR LIA K+CAPI+LRLAWH AGTYD  +KTGGP G+IR+ +E  H  N+GL IA+ L E ++ + P ++YAD YQLAGVVAVEVTGGP+I F PGR D +  P EGRLP+A +G  HLRDVF  MGLSDK+IV LSGGHTLGR H ERSGF+GPWT  PL FDNSYF
Sbjct:    4 PIVDAEYLKEITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQSKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKDSNVCPKEGRLPDAKQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYF 188          
The following BLAST results are available for this feature:
BLAST of CB293512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
APX2_ARATH2.299e-9484.57L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_PEA7.653e-9081.58L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]
APX2_ORYSJ1.951e-8578.84L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSJ4.067e-8376.72L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI4.067e-8376.72L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX1_ARATH2.019e-8275.13L-ascorbate peroxidase 1, cytosolic OS=Arabidopsis... [more]
APX3_ORYSJ1.314e-6565.41Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI1.314e-6565.41Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ1.717e-6565.95Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH2.479e-6464.32L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293512 ID=CB293512; Name=CB293512; organism=Citrus sinensis; type=EST; length=740bp
GCACTAGGCCGGTCCAATTTCTTCCACACAACACCCGCGTCTCGGTTCTT
CAGCTCGTCACAGTTCAGTTCGGTCATCGCATTCGACAGTTCAGTTCAGC
TGAGCTTCTTCTTCTTCTTTTTTCATCAGGGGAAAGTGTTATCCAAAAGT
GAGCGATGAGTATCAGAAAGCAGTGGAGAAATGCAAGAGGAAACTCAGAG
GACTCATTGCTGAGAAACACTGTGCCCCTATCATTCTTCGCTTGGCATGG
CACTCAGCGGGGACTTATGACGTGAACACTAAGACAGGAGGGCCTTTTGG
GACGATCAGGCACCCAGATGAGCTTGCTCATGAGGATAACAATGGTCTTG
ATATTGCTGTCAGGCTTTTGGAGCCCATCGAGCAGCAGTTTCCTATCTTG
TCCTACGCTGATTTCTATCAGTTGGCTGGAGTTGTTGCCGTTGAAGTTAC
CGGAGGGCCTGAAATACCTTTCCACCCTGGAAGACCGGACAAATCTGATC
CGCCCCCAGAAGGTCGCTTGCCAAATGCCACCAAAGGTTCTGACCATCTG
AGAGATGTCTTCGGCCACATGGGTCTGAGTGATAAGGAAATCGTTGTTTT
ATCCGGCGGTCATACATTGGGTAGGTGCCACAAGGAGCGTTCTGGATTTG
AAGGACCCTGGACTAACAATCCACTTATTTTTGACAATTCATATTTTAAG
GAATTGCTGAGTGGAGAGAAAGAAGGTCTACTTCAGCTGC
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