CB293515

Overview
NameCB293515
Unique NameCB293515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23
Identity = 78/259 (30.12%), Postives = 124/259 (47.88%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHE-MVKIV--KKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSV-PFFTPPQTQPIVEPTSAFDDAAIQA-------------------------------SLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            DW +N+E+CD+IN      KDA++ LKKRL G++N +  +LAL  LET  KNCG     Q+  RD +   +VKI+  K  P   V++K+L LI  W +AF          +  Y EL+  G+EFP    +++ P  TP ++ P V+P +    +  Q                                S  S+  G   +E+   +G   V+ EML  +      A   E++ DL   CR+ Q+R++ L++  ++EE+
Sbjct:   29 DWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVHI-YEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQDLNRTCRTMQERIVELISRVSNEEV 286          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.233e-22
Identity = 76/257 (29.57%), Postives = 125/257 (48.64%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHE-MVKIV--KKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSV-PFFTPPQTQPIVEPTSAFDDAAIQASLQS--------------DASGLSL---------------AEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            DW +N+E+CD+IN      KDA++ LKKRL G++N +  +LAL  LET  KNCG      +  RD +   +VKI+  K  P   V++K+L LI  W +AF          +  Y EL+  GVEFP    +++ P  TP ++ P V+P +    +  Q    +               A  LS+               +E+   +G   V+ EML  +     ++   E++ +L   CR+ Q+R++ L++  ++EE+
Sbjct:   29 DWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH-IYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQQRIVELISRVSNEEV 284          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.141e-22
Identity = 74/257 (28.79%), Postives = 127/257 (49.42%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHE-MVKIV--KKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSV-PFFTPPQTQPIVEPTSAFDDAAIQ----------------ASLQSDASGLS-------------LAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            DW +N+E+CD+IN      KDA++ LKKRL G++N +  +LAL  LET  KNCG      +  RD +   +VKI+  K  P   V++K+L LI  W +AF          +  Y EL+  G+EFP    +++ P  TP ++ P ++P +    +  Q                ++LQ+ A  ++              +E+   +G   V+ EML  +     ++   E++ +L   CR+ Q R++ L++  ++EE+
Sbjct:   29 DWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVH-IYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQHRIVELISRVSNEEV 284          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 77/253 (30.43%), Postives = 116/253 (45.85%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVK---IVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSV-PFFTPPQTQPIVEPTSAFDDAAIQASLQSDAS-------------------------GLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            DWA+N+E+CD+IN      KDAL+ +KKR+ G+KN    +LAL  LET  KNCG      +  +D +  ++    + K  P   V +K+L LI +W +AF             Y +LR  G+EFP    + + P  TP +T    E  S  D     +S Q D+                          G   +E++   G   V+ EML  L     E    E++ +L   CR+ Q+RV+ L+   A+E+L
Sbjct:   29 DWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPD-LTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPIAPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQL 280          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 74/253 (29.25%), Postives = 116/253 (45.85%), Query Frame = 1
Query:  151 DWAINIELCDVINMDPGQAKDALKILKKR-LGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVK---IVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSV-PFFTPPQTQPIVEPTSAFDDAAIQASLQSDAS-------------------------GLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            DWA+N+E+CD+IN      KDA + +KKR +G+KN    +LAL  LET  KNCG      +  +D +  ++    + K  P   V +K+L LI +W +AF           A Y +LR  G+EFP    + + P  TP +T    E  S  +  +   S + D S                         G   +E++   G   V+ EML  L     E    E++ +L   CR+ Q+R++ L+   ++E+L
Sbjct:   29 DWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSPD-LTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNSVSSNTSQRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQL 280          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.420e-20
Identity = 74/257 (28.79%), Postives = 117/257 (45.53%), Query Frame = 1
Query:  139 LIGPDWAINIELCDVINMDPGQAKDALKILKKRL-GSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVK---IVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFP------------PR----------AENSVPFFTPPQTQ----PIVEPTSAFDDAAIQASLQSDASGLSLAEIQRAKGLADVLMEMLGALDSKNPEAVKQEIIVDLVDQCRSYQKRVMLLVNNTADEEL 819
            L G DW++N+E+CD+IN      KDA + +KKR+ G+KN    +LAL  LET  KNCG      +  +D +  ++    + K  P   V +K+L LI +W +AF           A Y +LR  G+EFP            PR           +NS    +P Q +    P+  P+     + +  +   +      +E++   G   V+ EML  L     E    E++ +L   CR+ Q+RV+ L+     E+L
Sbjct:   25 LRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAFRSSPD-LTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSVYSSNSQSGQNSPAVNSPQQMESILHPVTLPSGRDTSSNVPITPTQEQIKKLRSELEVVNGNVKVMSEMLTELVPSQAETSDLELLQELNRTCRAMQQRVLELIPRVQHEQL 280          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  136 MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPF 540
            +L+  DW   +++CD+I     QAK A+  +KK++  KNP V L AL  +E++ KNCG +V  ++  +  + E+ +++K++ ++NVR KIL LI  W  AF     +Y      Y  ++  G  FP   E+   F
Sbjct:   19 LLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRN-EPKYKVVQDTYQIMKVEGHVFPEFKESDAMF 152          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.314e-18
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  136 MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPF 540
            +L+  DW   +++CD+I     QAK A+  +KK++  KNP V L AL  +E++ KNCG +V  ++  +  + E+ +++K++ ++NVR KIL LI  W  AF     +Y      Y  ++  G  FP   E+   F
Sbjct:   19 LLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAFRN-EPKYKVVQDTYQIMKVEGHVFPEFKESDAMF 152          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.589e-17
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  136 MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPF 540
            +L+  DW   +++CD+I     QAK A+  +KK++  KNP V L AL  +E++ KNCG +V  ++  +  + E+  ++K++ ++NVR KIL LI  W  AF     +Y      Y  ++  G  FP   E+   F
Sbjct:   19 LLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN-EPKYKVVQDTYQIMKVEGHVFPEFKESDAMF 152          
BLAST of CB293515 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.589e-17
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  136 MLIGPDWAINIELCDVINMDPGQAKDALKILKKRLGSKNPKVQLLALFALETISKNCGDSVFQQIIERDILHEMVKIVKKKPDLNVREKILILIDTWQEAFGGPRGRYPQYYAAYNELRSAGVEFPPRAENSVPF 540
            +L+  DW   +++CD+I     QAK A+  +KK++  KNP V L AL  +E++ KNCG +V  ++  +  + E+  ++K++ ++NVR KIL LI  W  AF     +Y      Y  ++  G  FP   E+   F
Sbjct:   19 LLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN-EPKYKVVQDTYQIMKVEGHVFPEFKESDAMF 152          
The following BLAST results are available for this feature:
BLAST of CB293515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
TM1L2_XENLA1.484e-2330.12TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TM1L2_HUMAN6.233e-2229.57TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_MOUSE8.141e-2228.79TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TOM1_HUMAN1.063e-2130.43Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_MOUSE3.420e-2029.25Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_CHICK3.420e-2028.79Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
HGS_RAT9.314e-1833.33Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE9.314e-1833.33Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN1.589e-1733.33Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN1.589e-1733.33Hepatocyte growth factor-regulated tyrosine kinase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293515 ID=CB293515; Name=CB293515; organism=Citrus sinensis; type=EST; length=821bp
GCACTTTGCGTGATTTTATCTTTTTCTGATTCTCCTTCTGGGTGTTCTTC
ACTGGACACAGTGATCAGGGACTTAAGGTTCAGTACAATTATGGCTAATA
ATGCGGCAGCGTGTGCTGAGAGGGCGACTAATGACATGCTGATTGGTCCA
GACTGGGCAATAAACATTGAGTTATGCGATGTCATCAACATGGATCCTGG
GCAAGCCAAAGATGCATTGAAGATACTGAAGAAGCGCCTGGGCAGTAAAA
ATCCTAAAGTGCAATTGCTGGCTTTATTTGCATTGGAGACCATCAGCAAA
AATTGTGGTGATAGTGTATTTCAGCAGATCATTGAGCGTGATATCTTACA
TGAAATGGTTAAAATAGTAAAGAAGAAGCCAGACTTGAATGTGAGGGAAA
AGATTCTTATTTTAATTGATACGTGGCAAGAAGCTTTTGGGGGGCCGAGG
GGAAGGTATCCCCAATATTATGCTGCATATAATGAACTGAGGTCTGCTGG
AGTTGAATTCCCACCTCGGGCTGAGAATAGTGTACCATTCTTCACCCCAC
CACAAACCCAGCCAATAGTAGAACCTACTTCTGCATTTGATGATGCTGCT
ATACAGGCCTCCCTGCAGTCAGATGCTTCTGGCCTCAGCCTGGCAGAGAT
TCAAAGGGCTAAGGGACTAGCTGATGTGTTAATGGAAATGCTTGGTGCCT
TGGATTCCAAGAATCCTGAGGCTGTGAAGCAAGAAATAATTGTTGACCTT
GTTGATCAATGCCGTTCGTACCAAAAACGTGTCATGCTTCTTGTGAATAA
TACTGCAGATGAGGAACTTCT
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