CB293517

Overview
NameCB293517
Unique NameCB293517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB293517 vs. ExPASy Swiss-Prot
Match: BIM2_ARATH (Transcription factor BIM2 OS=Arabidopsis thaliana GN=BIM2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.850e-13
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = -2 
Query:  284 DMPISNNKKLKEQELPVEGGRINISTAYSQGLLKTLTQALQSSGVDLSQASVSVQIDLGKRAAQAPITLASNLKGNEVPASNQGTTGSRDRNGGEGSNQALKKQK 598
            + P +++   +  +L +EGG I+IS+AYS  LL +LTQALQ++G+DLSQA +SVQIDLGKRA Q  +T       N +    QG    RD +  E S  + K+ K
Sbjct:  210 ECPATSDGLGQSNDLVIEGGTISISSAYSHELLSSLTQALQNAGIDLSQAKLSVQIDLGKRANQG-LTHEEPSSKNPLSYDTQG----RDSSVEEESEHSHKRMK 309
[Close]
BLAST of CB293517 vs. ExPASy Swiss-Prot
Match: BIM1_ARATH (Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 50/134 (37.31%), Postives = 74/134 (55.22%), Query Frame = -2 
Query:  365 TNKAMPFPMSLQPNCY-KPVRNGGAAASLRPRLASDAENTTSQPQTLECHTRSCTGDMPISNNKKLKEQELPVEGGRINISTAYSQGLLKTLTQALQSSGVDLSQASVSVQIDLGKRAAQAPITLASNLKGNEV 763
            T    PFP+S+Q N +  PV  G        R+AS      S                P S ++K +E E  +EG  I IS+ YSQGL+KTL +AL++SGVDL++AS+SV+I+L K+++      +S+ K +EV
Sbjct:  394 TATTSPFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPS----------------PSSRSQKEEEDEEVLEGN-IRISSVYSQGLVKTLREALENSGVDLTKASISVEIELAKQSS------SSSFKDHEV 504
The following BLAST results are available for this feature:
BLAST of CB293517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BIM2_ARATH8.850e-1343.81Transcription factor BIM2 OS=Arabidopsis thaliana ... [more]
BIM1_ARATH4.392e-1237.31Transcription factor BIM1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293517 ID=CB293517; Name=CB293517; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTAGTAAGAAAACCTGTATAATGATTCACTAAAAT
AGAGTAAATAAATAATACATATTTGCTAGGAATTCTATGCATCCTAACAA
ACTGCAACTCTCTACATGTACAATCGATCTAGGTCTCAACTGGGCAGTTT
TATAAACCAGGAGAAGACATTATAAATAACAATAATAAACTCCCCCGATT
TTGAAAAGGGTACCCCCAAAAAATGAATTAATTAAATTACAAAAAAGAAT
AGTGTGGAAATTTTGATGTTAACATTTATCTATCTTTTGCTTCTTTAGTG
CTTGATTTGAGCCCTCACCTCCATTTCTGTCTCTAGAACCAGTGGTTCCT
TGATTGCTAGCCGGAACTTCATTTCCCTTAAGATTCGATGCTAGTGTAAT
TGGTGCCTGAGCAGCTCGTTTCCCAAGGTCAATTTGCACTGAGACGCTGG
CCTGTGACAAATCAACTCCAGAACTCTGCAGTGCTTGTGTCAGAGTCTTT
AGCAATCCTTGAGAATACGCAGTTGAGATGTTTATTCTGCCACCTTCAAC
AGGCAGCTCCTGTTCTTTTAACTTCTTATTATTAGAAATAGGCATGTCTC
CCGTACATGACCTAGTGTGACATTCCAGGGTTTGAGGCTGAGAAGTCGTG
TTCTCTGCATCGGATGCCAGTCTAGGCCGAAGTGAAGCTGCCGCACCACC
ATTCCTAACAGGTTTGTAGCAGTTTGGCTGGAGTGACATAGGAAAGGGCA
TTGCCTTATTTGTTATTCCAGGCTGGGGATCCATTGTCTTGAATGTAGAA
GCAGAGGTCATG
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