CB293518

Overview
NameCB293518
Unique NameCB293518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293518_ssr563 microsatellite CB293518_ssr563:563..572. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293518_ssr226 microsatellite CB293518_ssr226:226..237. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig312 contig Csv1_Contig312:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293518 vs. ExPASy Swiss-Prot
Match: BIM1_ARATH (Transcription factor BIM1 OS=Arabidopsis thaliana GN=BIM1 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.575e-49
Identity = 121/243 (49.79%), Postives = 159/243 (65.43%), Query Frame = 3
Query:   30 GRRPTHDFLSLYSHSTVQQDPRPP----SQGGFLKTHDFLQ-VGKINAKEE-STLEITSIVEKXXXXXXXXXXXXXVEHNLPGGIGTYSISHVSYFS---QKVPKPEGS---LFSLSQTSITEKNDENSNCSSYTG--SGFTLWEESAV-KKGKTGKENA-GERAIGRGETTVNVGQWV---SQSSSTNNSHRNSFSSLSCSQPLGMKSQSFMEMIKSAKGSTHDDDLDDAH*FILKRENSTT 701
            GR+PTHDFLSL SHSTV  DP+P     SQG  LKTHDFLQ +  + AKE+ S +  T+   +             ++H LPGGIGTY+IS + YF    Q++PKPE S   +F+ ++ ++ ++N  NSNCSSY    SGFTLW+ESA  KKG+T KEN+ GER   R +    VGQW     +S S  N+H + FSSLS SQ   +KSQSFM+MI+SAKGS+ +DDLDD   FI+K+E+S+T
Sbjct:   13 GRKPTHDFLSLCSHSTVHPDPKPTPPPSSQGSHLKTHDFLQPLECVGAKEDVSRINSTTTASEKPPPPAPPPP---LQHVLPGGIGTYTISPIPYFHHHHQRIPKPELSPPMMFNANERNVLDENS-NSNCSSYAAASSGFTLWDESASGKKGQTRKENSVGERVNMRADVAATVGQWPVAERRSQSLTNNHMSGFSSLSSSQGSVLKSQSFMDMIRSAKGSSQEDDLDDEEDFIMKKESSST 251          
The following BLAST results are available for this feature:
BLAST of CB293518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BIM1_ARATH1.575e-4949.79Transcription factor BIM1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293518 ID=CB293518; Name=CB293518; organism=Citrus sinensis; type=EST; length=701bp
GCACGATGCGGAACCGAAGTTGTTTTACAGGAAGAAGACCAACGCATGAC
TTTCTCTCACTGTACAGTCATTCAACAGTACAACAAGATCCAAGGCCACC
TTCTCAAGGTGGATTCCTCAAAACCCATGATTTTCTACAAGTAGGGAAAA
TTAATGCCAAGGAAGAAAGCACACTTGAAATAACGTCAATTGTGGAAAAG
CCACCTCCTCCGGCGCCGCCACCTCCTTCTTCTTCTTCTGTAGAGCATAA
TCTGCCCGGTGGGATTGGGACTTACAGTATAAGCCACGTCTCATACTTCA
GTCAAAAAGTTCCAAAGCCAGAGGGCTCACTTTTCTCACTATCTCAAACG
AGTATTACCGAAAAAAATGATGAGAATTCTAACTGCAGTTCTTACACTGG
TAGTGGTTTCACTCTGTGGGAAGAATCTGCTGTCAAAAAGGGAAAGACAG
GGAAGGAAAATGCCGGAGAAAGAGCCATTGGAAGAGGAGAAACGACGGTG
AATGTGGGGCAATGGGTGTCACAATCATCTTCCACCAACAACAGCCATCG
CAACAGCTTCAGCTCTCTCTCTTGCTCCCAGCCACTGGGGATGAAGAGCC
AGAGCTTCATGGAAATGATAAAGTCTGCAAAGGGTAGTACACATGATGAT
GATTTGGATGATGCACACTAGTTCATCCTTAAAAGAGAAAACTCCACTAC
C
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