CB293528

Overview
NameCB293528
Unique NameCB293528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293528_ssr59 microsatellite CB293528_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig867 contig Csv1_Contig867:189..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293528 vs. ExPASy Swiss-Prot
Match: Y2309_ARATH (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.810e-34
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 2 
Query:   89 MGGGNGQKAKMAREKNLEKQKAANKGSQLETNKKAMSIQCKVCMQTFMCTTSEVKCREHAEAKHPKSDIYACFPHLKK 322
            MGGGN QK+ MAR KNLEK KAA KGSQLE NKKAMSIQCKVCMQTF+CTTSEVKCREHAEAKHPK+D+ ACFPHLKK
Sbjct:    1 MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKADVVACFPHLKK 78
The following BLAST results are available for this feature:
BLAST of CB293528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2309_ARATH2.810e-3485.90Uncharacterized protein At2g23090 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293528 ID=CB293528; Name=CB293528; organism=Citrus sinensis; type=EST; length=571bp
CGCCCTATGTATTGGCGGATTAGGGTTTCGGGTGCTGCATCCTCCGATCT
ACCTATTGATCAATCAATCAACTAGTTAGATTCAGGACATGGGAGGAGGC
AACGGTCAAAAGGCCAAGATGGCTCGTGAGAAGAATTTGGAGAAACAAAA
AGCTGCCAACAAAGGAAGCCAATTGGAAACAAACAAGAAAGCTATGTCGA
TCCAGTGCAAGGTGTGTATGCAGACATTCATGTGCACGACTTCAGAGGTG
AAGTGCAGGGAGCATGCTGAAGCAAAGCACCCAAAGAGTGACATTTATGC
CTGCTTCCCCCATCTTAAGAAGTGATAAGAGTTTGGGGGAAAATATTATA
TGCCAGATATAGTGTGGGGACATAATCTTCCTTATTGTATAGTGTTCCCT
TTTCCAGCAATACCTCAGATTAAGTGTGTTGCGGTTTGTAGAATCTGTTT
GTTGCGGTTTGTAGAATCTGTGTGTGCATGTGAAGAGGGACTGGTTCATT
GTTCTGTTTTAATGGAATTTGTGTAATGTTATGGTAATTGATCTGTTCCT
TTTATAAAAAAAAAAAAAAAA
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