CB293533

Overview
NameCB293533
Unique NameCB293533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig404 contig Csv1_Contig404:59..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_DICDI (TIP41-like protein OS=Dictyostelium discoideum GN=tiprl PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.869e-33
Identity = 85/210 (40.48%), Postives = 128/210 (60.95%), Query Frame = 3
Query:  132 RRGLRIRGWEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQWKFRSKPFE-QLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMHCVF 758
            + G+ I  W I + K  IL S+  E WE++L  N LPEMV+G + + L + +    I FN  DAL    + +   ++V ++ +W+  +K FE Q+   +++TF++PY G+    + T  H    N +    L +E+  EKID+  L   +PILF+D+V+LYEDELADNG S+L+VK+RV   S FLL RF+LRVD V+ R  DTR++  F
Sbjct:   13 KNGIEIGDWVIHTSKNPILKSTEKEEWEKELVLNGLPEMVYGNNFIRLSNEKRDITIVFNCMDALKMLDKVADQSIKVSSSKKWEEINKGFEGQIEKSFEWTFSSPYTGT----ILTRGH-CYSNFEKPIGL-FENTTEKIDIEKLKRPDPILFFDDVLLYEDELADNGSSMLSVKIRVNNESVFLLSRFFLRVDDVICRCLDTRIYHEF 216          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_XENLA (TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.067e-32
Identity = 83/201 (41.29%), Postives = 127/201 (63.18%), Query Frame = 3
Query:  156 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMH 749
            W++ + K  I+ S+ VE+  +++    LPEM+FGE+ L ++H  SG  I FNA DAL   K  S   V+V  A +W   +  S+  ++++  YD+T+TT Y G+               L  +  L+     E+I+   L +KE I+F++EV+L+EDEL D+GVS L+VK+RVMP+S+FLLLRF+LRVDGVL+R+ DTR++
Sbjct:   18 WQLTAIKTHIMKSADVEKLAEEMSMPCLPEMMFGENVLRIQHT-SGFGIEFNANDALKVVKN-SQGSVKVACAEEWQESRSDSEHSKEVVKPYDWTYTTDYKGTL--------------LGDNMKLNVVPTTERINTEKLKAKEQIMFFEEVLLFEDELHDHGVSSLSVKIRVMPTSFFLLLRFFLRVDGVLIRMNDTRLY 202          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_XENTR (TIP41-like protein OS=Xenopus tropicalis GN=tiprl PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.300e-30
Identity = 77/201 (38.31%), Postives = 125/201 (62.19%), Query Frame = 3
Query:  156 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMH 749
            W++ + K  I+ S+  E+  +++    LPEM+FG++ L ++H  SG  I FNA DAL   K      ++V  A +W   +  S+  ++++  YD+T+TT Y G+               L  +  L+     +KI+   L ++E I+F++EV+L+EDEL D+GVS L+VK+RVMP+S+FLLLR++LRVDGVL+R+ DTR++
Sbjct:   18 WQLTAIKTHIMKSADAEKLAEEMSMPCLPEMMFGDNVLRIQHT-SGFGIEFNAKDALKVVKSNQAS-LKVACAEEWQESRSDSEHNKEVVKPYDWTYTTDYKGTL--------------LGDNMKLNVIPTTDKINTEKLKAREQIMFFEEVLLFEDELHDHGVSSLSVKIRVMPTSFFLLLRYFLRVDGVLIRMNDTRLY 202          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_RAT (TIP41-like protein OS=Rattus norvegicus GN=Tiprl PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 3
Query:  156 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMH 749
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL          ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D+GVS L+VK+RVMPSS+FLLLRF+LR+DGVL+R+ DTR++
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQ-GMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTL--------------LGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLY 202          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_MOUSE (TIP41-like protein OS=Mus musculus GN=Tiprl PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 3
Query:  156 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMH 749
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL          ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D+GVS L+VK+RVMPSS+FLLLRF+LR+DGVL+R+ DTR++
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQ-GMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTL--------------LGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLY 202          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_HUMAN (TIP41-like protein OS=Homo sapiens GN=TIPRL PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 80/201 (39.80%), Postives = 120/201 (59.70%), Query Frame = 3
Query:  156 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQW---KFRSKPFEQLILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMH 749
            W++ + K  I+ S+ VE+   +L    LPEM+FG++ L ++H  SG  I FNA DAL          ++V  A +W   +   +  +++I  YD+T+TT Y G+               L  S  L      + ID   L ++E I F++EV+L+EDEL D+GVS L+VK+RVMPSS+FLLLRF+LR+DGVL+R+ DTR++
Sbjct:   18 WKLTASKTHIMKSADVEKLADELHMPSLPEMMFGDNVLRIQH-GSGFGIEFNATDALRCVNNYQ-GMLKVACAEEWQESRTEGEHSKEVIKPYDWTYTTDYKGTL--------------LGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVSSLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLY 202          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIP41_YEAST (Type 2A phosphatase activator TIP41 OS=Saccharomyces cerevisiae GN=TIP41 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.174e-27
Identity = 81/228 (35.53%), Postives = 122/228 (53.51%), Query Frame = 3
Query:  141 LRIRGWEIESRKRSILNSSSVERWE-QKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQWKFRSKPFEQ------------------LILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMHCVFSDS 767
            + I  W I SRK+ ILNS  ++ WE +KL+   LPEM+FG + + +++ +    I FNA DAL   + +    + V  +  W   SK  +                   +I  YD+T+TT Y G+E+                  S    D  +K+ +  LA  + ILFYD+++L+EDELADNG+S+L VK+RVM     LL RF+LRVD VL+R+ DTR++  F ++
Sbjct:   92 ISINDWTISSRKKPILNSQELDIWENEKLKGLTLPEMIFGNNYIRIENSKQHWSIEFNALDALKEVQLQD-SGIRVAYSNDW-INSKKRQNSTNGAQRFTNDVNDDSLNIIHKYDWTYTTRYKGTES---------------SPESKFRLDNDQKLPLDKLAVHDKILFYDDMILFEDELADNGISILNVKIRVMNERLLLLSRFFLRVDDVLVRVYDTRIYVEFDEN 302          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIPRL_CAEEL (TIP41-like protein OS=Caenorhabditis elegans GN=ZK688.9 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 4.776e-21
Identity = 64/184 (34.78%), Postives = 101/184 (54.89%), Query Frame = 3
Query:  207 RWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALSGWKQESLPPVEVPAAAQWKFRSKPFEQLILD----YDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRM 746
            +++++L+    PEMVF  + L ++    G+ I FNA DAL     + LP V+V A+  W+   +   Q I +    +D+T+TT Y G+ T                          E+ID+  L  ++ ILF   + L+EDELAD+G++ L  +VRVM   +F+LLRF++RVD VL+R+ DTR+
Sbjct:   58 KYDRELKLEERPEMVFARNSLTIQFGRLGS-IEFNALDALKMVCADRLPDVKVGASTVWQSARQDRIQQISEHQKPFDWTYTTHYKGTVT------------------GCQVTPTTERIDMERLKRRDEILFSSSITLFEDELADHGIAQLLARVRVMRGYFFVLLRFYMRVDNVLLRVCDTRI 222          
BLAST of CB293533 vs. ExPASy Swiss-Prot
Match: TIP41_SCHPO (Type 2A phosphatase activator tip41 OS=Schizosaccharomyces pombe GN=tip41 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.645e-14
Identity = 65/203 (32.02%), Postives = 105/203 (51.72%), Query Frame = 3
Query:  156 WEIESRKRSILNSSSVERWEQKLETNHLPEMVFGESCLVLKHVESGTKIHFNAFDALS--GWKQESLPPVEVPAAAQW-KFRSKPFEQ--LILDYDYTFTTPYCGSETIEMDTDKHGTRDNLDGSSSLHWEDCKEKIDVVALASKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPSSWFLLLRFWLRVDGVLMRLRDTRMH 749
            W I+ ++ SIL S  +E  +  L     PEM FG + + +++ ++   + F   DAL   G K E +  ++V  A  W K R KP E+  +I  +D+T+ T Y G  TI+    K    D +              I V  + +    L+++E++L+EDELADNG S+  V+ RV+     LL R  +R+D V +RL +TR++
Sbjct:   12 WTIKVQRGSILKSHEMENLQSTLGFPP-PEMTFGNNYISIEY-KNQPVVGFFTEDALKMVGTKPEDV--MQVSFAKDWAKSRIKPGEEYPVIYPFDWTYYTDYQG--TIQRPNAKFIEIDQV--------------IPVQKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQGHLILLARLVVRLDKVNVRLNETRIY 194          
The following BLAST results are available for this feature:
BLAST of CB293533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TIPRL_DICDI1.869e-3340.48TIP41-like protein OS=Dictyostelium discoideum GN=... [more]
TIPRL_XENLA2.067e-3241.29TIP41-like protein OS=Xenopus laevis GN=tiprl PE=2... [more]
TIPRL_XENTR3.300e-3038.31TIP41-like protein OS=Xenopus tropicalis GN=tiprl ... [more]
TIPRL_RAT9.600e-3039.80TIP41-like protein OS=Rattus norvegicus GN=Tiprl P... [more]
TIPRL_MOUSE9.600e-3039.80TIP41-like protein OS=Mus musculus GN=Tiprl PE=2 S... [more]
TIPRL_HUMAN9.600e-3039.80TIP41-like protein OS=Homo sapiens GN=TIPRL PE=1 S... [more]
TIP41_YEAST1.174e-2735.53Type 2A phosphatase activator TIP41 OS=Saccharomyc... [more]
TIPRL_CAEEL4.776e-2134.78TIP41-like protein OS=Caenorhabditis elegans GN=ZK... [more]
TIP41_SCHPO9.645e-1432.02Type 2A phosphatase activator tip41 OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293533 ID=CB293533; Name=CB293533; organism=Citrus sinensis; type=EST; length=778bp
GGAAACAGCGGGCAAACTAAGAAGTCGTACTACTTACATAGGAAGGTAAA
ACCGGAAACCGATCGGGGATGGAAGTCGAGGTGGACGAGAAAGACCTAAA
GGTAGCCGGTGCTGAACCGTTGACCGGCGAACGCCGCGGACTGCGGATTC
GCGGCTGGGAGATCGAGTCTCGTAAACGCTCCATTCTCAATTCCTCCTCT
GTCGAGCGGTGGGAGCAAAAGCTAGAAACAAATCATTTGCCAGAGATGGT
TTTTGGAGAGAGTTGTTTGGTTCTTAAGCATGTTGAAAGTGGAACTAAGA
TTCATTTCAATGCATTTGATGCTTTAAGTGGTTGGAAACAGGAAAGTTTA
CCGCCTGTTGAAGTTCCTGCGGCCGCACAATGGAAATTCAGAAGCAAGCC
ATTTGAGCAGTTGATACTAGATTATGACTACACATTTACAACACCTTACT
GTGGAAGTGAAACAATTGAGATGGATACGGATAAGCATGGGACTAGAGAC
AACTTGGATGGGAGTTCCAGCCTGCACTGGGAGGACTGTAAGGAGAAAAT
TGATGTGGTAGCGCTAGCATCAAAAGAGCCTATTCTTTTCTATGATGAGG
TAGTTTTATATGAAGATGAGTTGGCTGATAATGGAGTGTCTCTTTTAACT
GTGAAAGTGAGAGTCATGCCAAGTAGTTGGTTTCTTCTCTTGCGATTTTG
GCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGACACCCGAATGCATT
GTGTTTTCTCTGACAGCGGAAACCCTGT
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