CB293534

Overview
NameCB293534
Unique NameCB293534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293534_ssr608 microsatellite CB293534_ssr608:608..622. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:21..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293534 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = -1
Query:  309 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSTEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 590
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CB293534 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = -1
Query:  303 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSTEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 590
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G++   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CB293534 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = -1
Query:  303 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSTE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 590
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + S+E      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
The following BLAST results are available for this feature:
BLAST of CB293534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ARG2_PHAAU8.574e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI3.728e-1244.79Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.416e-1139.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293534 ID=CB293534; Name=CB293534; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTGAAATAATAAATCATCTTTATTTCCGAACCATG
GCAACAAAAAAACAGGAATGTTACATGCAATACAAACTCTAGTTTGGATC
CCCAAGTCAAAACAGAGAGAACAGGGGAGCTGCAGCTGCTACGCCAATTT
CCCGGAATTCCTCGAGAGCTCATGCGGCTGACCACATCAGAACAAATCCC
TTTTTAATCTTTTTTTAATTTTTCTTTCGTCCTTCCTCAGTTTCCATGTC
CGAATTAATATATATTAATAATAATACTTATTAATTTTGATGATCAGTTG
TTGTGCTTCAAGAACATGGCTCTGAGGTCGGCCCCATCGAGCTCGTTGGC
GAGATTCTCCGGCCTGTAGACACCAGTGACTGGGTCTGGGACCCACGAGA
CCTTCTCAGTGGATCCTGTCATCTCTTCTGCTGGTTTCTTCAACATCGCA
GCAGCACTCCTAGCTCCCCCTGTTGCCCGCGACACAGCGCCTTGTGATGC
CGCCGAGTATCCTCTTTTGTAGATGGCGTTAGAGATTCCGTCAGCGACGA
AAGCAGAGAAAAGCTTAGCGTTTGAGAAAGAGCGAGCCATTTTTCTTACT
TATGTGGGATGATGATGATGATAAGAGATCTTAACGCTGCTGCAGAAAGC
AATTTCCTTCTATTCTTTCTATCGAAAAGCCTTCAACAGCAGCTAAAGAA
ACTTCCCTCTTCGTAGCGCGAAAATCCCCTCCTCGTG
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