CB293535

Overview
NameCB293535
Unique NameCB293535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293535_ssr118 microsatellite CB293535_ssr118:118..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:19..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293535 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 45/94 (47.87%), Postives = 54/94 (57.45%), Query Frame = 3 
Query:  150 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXXMLKKPAE*MTGSSEKVSWVPDPVTGVYRPENLANELDGADLIAMFL 431
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  E      EKVSWVPDPVTG YRPEN  NE+D AD+ A  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93
The following BLAST results are available for this feature:
BLAST of CB293535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARG2_PHAAU4.292e-1547.87Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293535 ID=CB293535; Name=CB293535; organism=Citrus sinensis; type=EST; length=698bp
CGCACTATGAGGGGATTTTCGCGCTACGAAGAGGGAAGTTTCTTTACCTG
CTGTTGAAGGCTTTTCGATAGAAAGAATACAAGGAAATTGCTTTCTGCAG
CAGCGTTAACATCTCTTATCATCATCATCATCCCACATAACTAAGAAAAA
TGGCTCGCTCTTTCTCAAACGCTAAGCTTTTCTCTGCTTTCGTCGCTGAC
GGAATCTCTAACGCCATCTACAAAAGAGGATACTCGGCGGCATCACAAGG
CGCTGTGTCGCGGGCAACAGGGGGAGCTAGGAGTGCTGCTGCCATGTTGA
AGAAACCAGCAGAATAGATGACAGGATCCAGTGAGAAGGTCTCGTGGGTC
CCAGACCCAGTCACTGGTGTCTACAGGCCGGAGAATCTCGCCAACGAGCT
CGATGGGGCCGACCTCATAGCCATGTTCTTGAAGCACAACAACTGATCAT
CAAAATTAATAAGCATTATTATTAATATATATTAATTCGGACATGGAAAC
TGAGGAAGGACGAAAGAAAAATTACTAAAAGATTAAAAAGGGATTTGTTC
TGATGTGGTCAGCCGCATGAGCTCTCGAGGAATTCCGGGAAATTGGCGTA
GCAGCTGCAGCTCCCCTGTTCTCTCTGTTTTGACTTGGGGATCCAAACTA
GATTTTGTATTGCATGTAACATTCCTGTTTTTTTGTTGCCATTTTTCG
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