CB293536

Overview
NameCB293536
Unique NameCB293536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12440 contig Csv1_Contig12440:502..1304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.715e-107
Identity = 180/220 (81.82%), Postives = 205/220 (93.18%), Query Frame = -3
Query:  140 KLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 799
            KLE+  K LPSGF + PIQFEKDDDTN+HMD+IAG ANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK L GGHK+EDYRNTFANLA+PLFS+AEPVPPK IKH+++SWTVWDRW +  N TLREL++WLK+KGLNAYSISCG+ LL+NSMFPRHKER+D+KVVD+AREVAK+E+P YRRHLDVVVACEDD+DND+DIPL+S+YFR
Sbjct:  832 KLEEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 2.715e-107
Identity = 180/220 (81.82%), Postives = 205/220 (93.18%), Query Frame = -3
Query:  140 KLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 799
            KLE+  K LPSGF + PIQFEKDDDTN+HMD+IAG ANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK L GGHK+EDYRNTFANLA+PLFS+AEPVPPK IKH+++SWTVWDRW +  N TLREL++WLK+KGLNAYSISCG+ LL+NSMFPRHKER+D+KVVD+AREVAK+E+P YRRHLDVVVACEDD+DND+DIPL+S+YFR
Sbjct:  832 KLEEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.596e-99
Identity = 169/220 (76.82%), Postives = 199/220 (90.45%), Query Frame = -3
Query:  140 KLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 799
            KL++  K L  GF++KPIQFEKDDDTN+HMD+I+GLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKV+ G H +EDYRNTFANLALPLFSMAEPVPPKV+KH++ SWTVWDRW ++ N TL EL+QW  DKGL AYSISCG+ LL+N+MF RHK+R+ KKVVD+AREVAKV++P YRRHLD+ VACED+++ND+DIPL+S+YFR
Sbjct:  834 KLQEYAKMLLPGFQMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFANLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.733e-45
Identity = 92/210 (43.81%), Postives = 140/210 (66.67%), Query Frame = -3
Query:  149 GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVIKHRDMSWTVWDRWILKDNPTLRELIQWL-KDKGLNAYSISCGSCLLFNSMFPRHK--ERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISI 766
            GFRL P +FEKDDD+N+H+D I   +N+RA NY I   D+ K KF+AG+I+PA+ TSTA+ +GLVCLEL K++DG  K+E+Y+N F NLA+ LF+ ++P+  PK+  +      +WDR+ L D  TL+ELI +  K++GL    +S G  LL+ +  P  K  ER+  K+ +L  ++ K +L P+R+HL + + C+D    D+++P I I
Sbjct:  802 GFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLPD-CTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFICI 1010          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.467e-44
Identity = 93/234 (39.74%), Postives = 143/234 (61.11%), Query Frame = -3
Query:  140 KLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILK------DNPTLRELIQWLK-DKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 799
            +LE+ +  LPS     GF++ PI FEKDDDTN+HMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L  Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL++ + + K +  L    +S G  +L++   P  + KER+D+ + ++   V+K +L  + R L + + C D+   D+++P +    R
Sbjct:  825 RLEELKATLPSPEKLPGFKMYPIDFEKDDDTNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLNSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR 1058          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.467e-44
Identity = 93/233 (39.91%), Postives = 145/233 (62.23%), Query Frame = -3
Query:  140 LEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILK------DNPTLRELIQWLK-DKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 796
            LE+ +  LP+     GF++ PI FEKDDD+N+HMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+T+   GLVCLELYKV+ G  +LE Y+N+F NLALPLFS + P+ P+  ++ D  WT+WDR+ ++      +  TL++ + + K +  L    +S G  +L++   P  + KER+D+ + ++   V+K +L  + + L   + C  D  +DI++P +    R
Sbjct:  826 LEELKTALPTPDKLLGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYGISPADRHKSKLIAGKIIPAIATTTSAIVGLVCLELYKVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQYYDQEWTLWDRFDVQGLQPSGEEMTLKQFLDYFKTEHKLEVIMLSQGVSMLYSVFMPASKLKERLDQPMTEIVSCVSKQKLGHHVKSLVFELCCNSDSGDDIEVPYVRYIIR 1058          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.916e-44
Identity = 92/234 (39.32%), Postives = 144/234 (61.54%), Query Frame = -3
Query:  140 KLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILK------DNPTLRELIQWLK-DKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 799
            +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G  +L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL++ + + K +  L    +S G  +L++   P  + KER+D+ + ++   V+K +L  + R L + + C D+   D+++P +    R
Sbjct:  825 RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPSADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR 1058          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.268e-44
Identity = 92/234 (39.32%), Postives = 143/234 (61.11%), Query Frame = -3
Query:  140 KLEQCRKNLPS-----GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILK------DNPTLRELIQWLK-DKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 799
            +LE+ +  LPS     GF++ PI FEKDDD+N+HMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   GLVCLELYKV+ G   L+ Y+N F NLALP F  +EP+     ++ +  WT+WDR+ ++      +  TL++ + + K +  L    +S G  +L++   P  + KER+D+ + ++   V+K +L  + R L + + C D+   D+++P +    R
Sbjct:  825 RLEELKATLPSPDKLPGFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVGLVCLELYKVVQGHRHLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGLQPNGEEMTLKQFLDYFKTEHKLEITMLSQGVSMLYSFFMPAAKLKERLDQPMTEIVSRVSKRKLGRHVRALVLELCCNDESGEDVEVPYVRYTIR 1058          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1_CANAL (Ubiquitin-activating enzyme E1 1 (Fragment) OS=Candida albicans GN=UBA1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.507e-44
Identity = 91/203 (44.83%), Postives = 134/203 (66.01%), Query Frame = -3
Query:  149 QFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLRELI-QWLKDKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISI 745
            +FEKDDDTN+H++ I   +N RA NY I   D  K KFIAG+IIPAIAT+TA+ TGLVCLELYKV+DG   +E Y+N F NLALP    +EP+     K+ +  +  +WDR+ L  + TL+EL+  + K++GL    +S G  LL+ S FP  + K+R+  K+  L +EV+K E+P + ++L   + C+D+E  D+++P I +
Sbjct:    1 EFEKDDDTNHHIEFITAASNCRALNYGIEIADAHKTKFIAGKIIPAIATTTALVTGLVCLELYKVVDGKDDIEQYKNGFINLALPFIGFSEPIKSPEGKYNNKKFDQIWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNLIFEICCDDEEGEDVEVPYICV 203          
BLAST of CB293536 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.242e-43
Identity = 94/227 (41.41%), Postives = 145/227 (63.88%), Query Frame = -3
Query:  146 KLEQCRKNLP-----SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPV-PPKVIKHRDMSWTVWDRWILKDNPTLRELIQ-WLKDKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIY 799
            +++Q   +LP     +GF+L+P+ FEKDDDTN+H++ I   +N RA+NY I   D+ K KFIAGRIIPAIAT+T++ TGLV LELYK++D    +E Y+N F NLALP F  +EP+  PK   +      +WDR+ +K +  L +LI+ + KD+GL    +S G  LL+ S FP  + KER++  +  L + V K ++P +   + + +  +D E  D+++P I+I+
Sbjct:  797 EIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEVPFITIH 1023          
The following BLAST results are available for this feature:
BLAST of CB293536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBE12_WHEAT2.715e-10781.82Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT2.715e-10781.82Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT1.596e-9976.82Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_SCHPO1.733e-4543.81Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1_BOVIN1.467e-4439.74Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1Y_MOUSE1.467e-4439.91Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_HUMAN1.916e-4439.32Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RABIT4.268e-4439.32Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_CANAL9.507e-4444.83Ubiquitin-activating enzyme E1 1 (Fragment) OS=Can... [more]
UBA1_YEAST1.242e-4341.41Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293536 ID=CB293536; Name=CB293536; organism=Citrus sinensis; type=EST; length=804bp
TTTTTTTTTTTTTTTTTGAATCAAAGTTGCTTTCCGTTCATGCGTGAGAA
AGCAGTACTCAACCACATAACATCGGAACCAGTATATTAATTAAGGGTCT
CGTCCTACAATCACAGTTCGACCTGACAATCAACATTTAACGGAAGTAAA
TTGATATCAGAGGAATGTCGATGTCATTATCCTCATCATCCTCGCACGCC
ACAACAACATCCAGGTGCCGACGATAGGGAGGCAATTCAACTTTGGCCAC
TTCCCTAGCCAGATCGACAACCTTCTTGTCCATCCGCTCTTTGTGGCGAG
GGAACATACTATTAAAGAGCAGGCAGCTTCCACATGAAATGCTATAAGCA
TTCAAACCCTTATCCTTGAGCCATTGGATAAGCTCCCTTAGGGTCGGATT
GTCTTTAAGTATCCATCTGTCCCAAACAGTCCAGCTCATATCACGGTGCT
TTATGACCTTTGGTGGGACTGGCTCAGCCATAGAGAACAGAGGCAAAGCT
AGGTTGGCAAATGTATTTCGGTAGTCTTCCAGTTTGTGTCCTCCATCCAG
AACCTTGTATAGCTCCAGGCACACAAGACCGGTAGCCATTGCAGTGGAGG
TTGCAATTGCTGGAATGATCCTTCCAGCAATAAACTTGGCTTTCAGCTTG
TCGACCTCAGGAATGCTATAGTTCCTTGCCCTCATGTTAGCAAGCCCAGC
TATCATATCCATGTGGTAGTTTGTGTCATCATCCTTTTCGAACTGAATTG
GTTTCAACCTGAACCCAGATGGCAGGTTCTTTCTGCACTGCTCTAACTTT
ATAA
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