CB293537

Overview
NameCB293537
Unique NameCB293537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293537_ssr13 microsatellite CB293537_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293537_ssr296 microsatellite CB293537_ssr296:296..313. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig313 contig Csv1_Contig313:1..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.499e-60
Identity = 113/140 (80.71%), Postives = 127/140 (90.71%), Query Frame = 3
Query:  411 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 830
            +IDEDLHSRQLAVYGRETM+ LF SN+LVSG+QGLGAEIAKNL+LAGVKSVTLHD+G VELWDLSSNF  S+ND+G+NRA A VQKLQELNNAV++S LT  LTKE LS FQAVVFTDISLDKAIEFDD+CH+HQP I+F
Sbjct:   42 EIDEDLHSRQLAVYGRETMKPLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVELWDLSSNFFLSENDVGQNRAQACVQKLQELNNAVLVSALTGDLTKEHLSKFQAVVFTDISLDKAIEFDDYCHSHQPPIAF 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.876e-60
Identity = 113/140 (80.71%), Postives = 127/140 (90.71%), Query Frame = 3
Query:  411 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 830
            +IDEDLHSRQLAVYGRETM+RLF SN+LVSG+QGLGAEIAKNL+LAGVKSVTLHD+G VELWDLSSNF  S+ND+G+NRA A VQKLQELNNAV++S LT  LTKE LS FQAVVFTDISLDKAIEFDD+CH+ QP I+F
Sbjct:   42 EIDEDLHSRQLAVYGRETMKRLFGSNVLVSGLQGLGAEIAKNLVLAGVKSVTLHDDGNVELWDLSSNFFLSENDVGQNRAQACVQKLQELNNAVLVSALTGDLTKEHLSKFQAVVFTDISLDKAIEFDDYCHSQQPPIAF 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.942e-57
Identity = 109/140 (77.86%), Postives = 122/140 (87.14%), Query Frame = 3
Query:  411 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISF 830
            +IDEDLHSRQLAVYGRETMRRLFAS++LVSG+ GLGAEIAKNL LAGVKSVT+HD  TV++WDLS NF  S++DIGKNRA A V KLQELNNAV++S LT +LT E LS FQAVVFTDI LDKA EFDD+CHNHQP ISF
Sbjct:   45 EIDEDLHSRQLAVYGRETMRRLFASDVLVSGLNGLGAEIAKNLALAGVKSVTIHDVKTVKMWDLSGNFFLSEDDIGKNRAAACVAKLQELNNAVLISALTEELTTEHLSKFQAVVFTDIDLDKAYEFDDYCHNHQPPISF 184          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.656e-36
Identity = 82/165 (49.70%), Postives = 108/165 (65.45%), Query Frame = 3
Query:  333 KEGEN----HSISASIAEVPIMTLG-NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNH 812
            K G N    HS+ + +  VP   +  N +  DIDE L+SRQL V G E M+RL  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V +S  T  L ++ LSDFQ VV T+  L+  +   +FCH+H
Sbjct:   18 KPGSNCSPAHSVLSEVPSVPANGMAKNVSDADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVSAYTGPLVEDFLSDFQVVVLTNSPLEDQLRVGEFCHSH 182          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.542e-35
Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 3
Query:  333 KEGENHSISASI-AEVP-IMTLG---NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHN 809
            K G N S + S+ +EVP + T G   N ++ DIDE L+SRQL V G E M+RL  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L+  +   +FCHN
Sbjct:   18 KPGSNCSPAQSVLSEVPSVPTNGMAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNTPLEDQLRVGEFCHN 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.538e-34
Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = 3
Query:  348 HSISASIAEVPIMTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNH 812
            +S+   +   P   +  + + DIDE L+SRQL V G E M+ L AS++L+SG+QGLG EIAKN+IL GVK+VTLHD+G  +  DLSS F   + DIGKNRA  S  +L ELN+ V +   T  L +E LS FQ VV T+  L+  ++  +FCH+H
Sbjct:   27 YSVMFGVPPGPTNEMSKNKEMDIDESLYSRQLYVLGHEAMKHLQASSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGIAQWADLSSQFCLREEDIGKNRAEISQPRLAELNSYVPVFAYTGPLIEEFLSGFQVVVLTNTPLEYQLQVGEFCHSH 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.234e-33
Identity = 77/164 (46.95%), Postives = 107/164 (65.24%), Query Frame = 3
Query:  333 KEGEN----HSISASIAEVPIMTLG-NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHN 809
            K G N     S+ + ++ VP   +  N ++ DIDE L+SRQL V G E M+ L  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L++ +   +FCH+
Sbjct:   18 KPGSNCSSAQSVLSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEEQLRVGEFCHS 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.749e-33
Identity = 79/164 (48.17%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  333 KEGENHSISASIA-EVPIMTLG----NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHN 809
            K G N S + S+  +VP         N ++ DIDE L+SRQL V G E M+RL  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L+  +   +FCH+
Sbjct:   18 KPGSNCSPAQSVLPQVPSAPTNGMAKNGSEADIDEGLYSRQLYVLGHEAMKRLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTAQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSGFQVVVLTNSPLEDQLRVGEFCHS 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.689e-33
Identity = 78/164 (47.56%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  333 KEGENHSISAS----IAEVPIMTLG-NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHN 809
            K G N S + S    ++ VP   +  N ++ DIDE L+SRQL V G E M+ L  S++LVSG++GLG EIAKN+IL GVK+VTLHD+GT +  DLSS F   + DIGKNRA  S  +L ELN+ V ++  T  L ++ LS FQ VV T+  L+  +   +FCH+
Sbjct:   18 KPGSNCSPAQSALSEVSSVPTNGMAKNGSEADIDESLYSRQLYVLGHEAMKMLQTSSVLVSGLRGLGVEIAKNIILGGVKAVTLHDQGTTQWADLSSQFYLREEDIGKNRAEVSQPRLAELNSYVPVTAYTGPLVEDFLSSFQVVVLTNSPLEAQLRVGEFCHS 181          
BLAST of CB293537 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.662e-28
Identity = 69/144 (47.92%), Postives = 96/144 (66.67%), Query Frame = 3
Query:  384 MTLGNSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCH-NH 812
            M +  ++Q  IDE L+SRQL V G E M+++  SN+L+ G +GLG EIAKN+ LAGVKSVTL+D     + DLSS +  +++DIG  RA  +V KL ELN  V +S +  +L+ E L +F+ VV T+ SL K +E +DF H NH
Sbjct:    5 MNIDQTDQNTIDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVS-VVDELSTEYLKNFKCVVVTETSLTKQLEINDFTHKNH 147          
The following BLAST results are available for this feature:
BLAST of CB293537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
UBE12_WHEAT4.499e-6080.71Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT5.876e-6080.71Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT7.942e-5777.86Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_BOVIN2.656e-3649.70Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_HUMAN6.542e-3550.61Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1Y_MOUSE5.538e-3447.74Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBA1_RAT1.234e-3346.95Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_RABIT2.749e-3348.17Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_MOUSE4.689e-3347.56Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_SCHPO2.662e-2847.92Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ba12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ba12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293537 ID=CB293537; Name=CB293537; organism=Citrus sinensis; type=EST; length=832bp
GCAAAAAACTCGCACACACACAAAAATTAAAAAAAAAAGAATTAAAAATT
CAAAAAATAAGAAAAAAAGTAATCAGAGTCTCTCTTTCTTTCAGATTCCA
TTCTTCTCTTAATCACAGTCCTAATCGCTTACTGCACTATATGCTTCCTA
GAAAGAGAGCCAGTGAAGGAGTGGTCGTTGTGAACGAAGAGACTCAAAAC
GCAGCTCAAGAAAGCCAAAACGACATCGAAATCGCAAACGCATCATCTGC
TACCAAGAAGCATCGGATCTCTGCCACGGCTGATAGTAACAACAACAGCA
GCAGCAGCAGCAGCAACAACGTAGTCACTGGAAAGGAGGGGGAGAATCAT
AGTATCAGTGCAAGCATAGCTGAAGTGCCGATCATGACTTTGGGCAATTC
AAATCAGACAGACATAGATGAAGATCTGCACAGCCGACAGCTGGCTGTGT
ATGGTCGCGAGACGATGAGGCGGCTTTTTGCTTCAAATATCCTCGTCTCC
GGGATGCAGGGTCTTGGTGCCGAAATTGCAAAGAATCTGATTCTTGCGGG
TGTCAAGTCTGTGACCTTGCACGATGAAGGGACGGTGGAGTTGTGGGATT
TGTCGAGTAATTTTGTATTTTCAGATAATGACATTGGTAAGAACAGAGCA
CTTGCTTCTGTTCAGAAGTTGCAGGAGCTCAATAATGCAGTTGTCCTTTC
TACCTTAACGTCGAAATTGACCAAAGAACAACTTTCTGATTTTCAGGCTG
TTGTCTTCACTGACATTAGTCTTGATAAAGCCATTGAGTTCGACGACTTT
TGCCACAATCATCAACCAGCTATCTCCTTCAT
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