CB293538 | Citrus Genome Database

Overview


Name	CB293538
Unique Name	CB293538
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	246

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CB293538 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.003e-23
Identity = 56/71 (78.87%), Postives = 56/71 (78.87%), Query Frame = -2

Query:   33 GYVAAAPLGPIFRPGIREKNDLSPAVREDFGAFSPGPPDPIIGYSRPENRAVEIDPAELREMLLTPKVRAH 245
            GY AAAPLG I R GI EKNDL PAVRED GA S   PDPI GY RPENRAVEIDPAELREMLL  KVRAH
Sbjct:   27 GYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97

The following BLAST results are available for this feature:

BLAST of CB293538 vs. ExPASy Swiss-Prot

BLAST of CB293538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
LEA5_CITSI	1.003e-23	78.87	Late embryogenesis abundant protein Lea5 OS=Citrus...	[more]

Properties


Property Name	Value
Genbank description	UCRCS01_06bb01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB293538 ID=CB293538; Name=CB293538; organism=Citrus sinensis; type=EST; length=246bp
AAGGATTTGGTGGTATGGGCCACCCCTCCCTAATGGGCCCTGACTTTGGG
GGTCAACAACATCTCTCGAAGCTCTGCTGGATCAATCTCCACCGCCCGAT
TCTCCGGCCTGGAATACCCAATGATGGGATCTGGGGGCCCGGGAGAAAAA
GCCCCAAAATCCTCTCTCACCGCAGGGCTCAAATCATTTTTCTCCCTGAT
ACCCGGCCGAAATATGGGCCCCAAGGGGGCTGCTGCAACATATCCT