CB293541

Overview
NameCB293541
Unique NameCB293541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:138..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 1.411e-93
Identity = 165/227 (72.69%), Postives = 191/227 (84.14%), Query Frame = 2
Query:   38 VSSDILLLCCXXXXXXXXXXFDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            + S ++L+            FD+SNPIR+VS DGLR+ E SV Q++GQ+RH LSFARF  RYGK Y++VEEMKLRF+ F +NLDLIRSTN KGLSY+LG+N+FAD +W+EFQR +LGAAQNCSAT KG+HK+T   LPETKDWRE GIVSPVKDQG CGSCWTFSTTG+LEAAYHQAFGKGISLS+QQLVDCA AFNN GCNGGLPSQAFEYIK +GGLDTE+AYPY
Sbjct:    6 ILSSVVLVVLVAASAAANIGFDESNPIRMVS-DGLREVEESVSQILGQSRHVLSFARFTHRYGKKYQNVEEMKLRFSIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLGAAQNCSATLKGSHKVTEAALPETKDWREDGIVSPVKDQGGCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGAFNNYGCNGGLPSQAFEYIKSNGGLDTEKAYPY 231          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 7.003e-93
Identity = 162/230 (70.43%), Postives = 192/230 (83.48%), Query Frame = 2
Query:   29 VQLVSSDILLLCCXXXXXXXXXXFDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            V+L  S  +LL            FD+SNPI++VS D L + E +V+Q++GQ+RH LSF+RF  RYGK Y+SVEEMKLRF+ F +NLDLIRSTN KGLSY+L LN+FAD +W+EFQR++LGAAQNCSAT KG+HK+T   +P+TKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAYHQAFGKGISLS+QQLVDCA  FNN GC+GGLPSQAFEYIKY+GGLDTEEAYPY
Sbjct:    3 VKLNLSSSILLILFAAAASKEIGFDESNPIKMVS-DNLHELEDTVVQILGQSRHVLSFSRFTHRYGKKYQSVEEMKLRFSVFKENLDLIRSTNKKGLSYKLSLNQFADLTWQEFQRYKLGAAQNCSATLKGSHKITEATVPDTKDWREDGIVSPVKEQGHCGSCWTFSTTGALEAAYHQAFGKGISLSEQQLVDCAGTFNNFGCHGGLPSQAFEYIKYNGGLDTEEAYPY 231          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.562e-82
Identity = 150/207 (72.46%), Postives = 171/207 (82.61%), Query Frame = 2
Query:   98 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F D NPIR V      + E  +LQV+GQ R ALSFARFA R+ K Y+SVEE+K RF  F  NL +IRS N KGLSY+LG+N+F D +W+EF++H+LGA+QNCSATTKGN KLT  VLPETKDWR+ GIVSPVK QG CGSCWTFSTTG+LEAAY QAFGKGISLS+QQLVDCA AFNN GCNGGLPSQAFEYIK++GGLDTEEAYPY
Sbjct:   25 FADKNPIRQVVFPD--ELENGILQVVGQTRSALSFARFAIRHRKRYDSVEEIKQRFEIFLDNLKMIRSHNRKGLSYKLGINEFTDLTWDEFRKHKLGASQNCSATTKGNLKLTNVVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFNNFGCNGGLPSQAFEYIKFNGGLDTEEAYPY 229          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.760e-81
Identity = 146/208 (70.19%), Postives = 169/208 (81.25%), Query Frame = 2
Query:   98 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT-ADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            FDDSNPIR V+       E++V+  +G+ R AL FARFA R+GK Y    E++ RF  FS++L+L+RSTN +GL YRLG+N+FAD SWEEFQ  RLGAAQNCSAT  GNH++  A  LPETKDWRE GIVSPVKDQGHCGSCWTFSTTGSLEAAY QA GK +SLS+QQLVDCA A+NN GC+GGLPSQAFEYIKY+GGLDTEEAYPY
Sbjct:   28 FDDSNPIRSVTDHAASALESTVIAALGRTRDALRFARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGLPYRLGINRFADMSWEEFQASRLGAAQNCSATLAGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPY 235          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.049e-80
Identity = 148/209 (70.81%), Postives = 167/209 (79.90%), Query Frame = 2
Query:   98 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLTADV--LPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F DSNPIR V+       E++V   +G+ R AL FARFA RYGK YES  E+  RF  FS++L L+RSTN KGLSYRLG+N+FAD SWEEF+  RLGAAQNCSAT  GNH++ A    LPETKDWRE GIVSPVK+QGHCGSCWTFSTTG+LEAAY QA GK ISLS+QQLVDC  AFNN GCNGGLPSQAFEYIKY+GGLDTEE+YPY
Sbjct:   25 FADSNPIRPVTDRAASALESTVFAALGRTRDALRFARFAVRYGKSYESAAEVHKRFRIFSESLQLVRSTNRKGLSYRLGINRFADMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDCGFAFNNFGCNGGLPSQAFEYIKYNGGLDTEESYPY 233          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.799e-80
Identity = 145/208 (69.71%), Postives = 166/208 (79.81%), Query Frame = 2
Query:   98 FDDSNPIRLVSSDGLRDFETSVLQVIGQARHALSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAAQNCSATTKGNHKLT-ADVLPETKDWRESGIVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F DSNPIR V+       E++VL  +G+ RHAL FARFA RYGK YES  E++ RF  FS++L+ +RSTN KGL YRLG+N+F+D SWEEFQ  RLGAAQ CSAT  GNH +  A  LPETKDWRE GIVSPVK+Q HCGSCWTFSTTG+LEAAY QA GK ISLS+QQLVDCA  FNN GCNGGLPSQAFEYIKY+GG+DTEE+YPY
Sbjct:   27 FADSNPIRPVTDRAASTLESAVLGALGRTRHALRFARFAVRYGKSYESAAEVRRRFRIFSESLEEVRSTNRKGLPYRLGINRFSDMSWEEFQATRLGAAQTCSATLAGNHLMRDAAALPETKDWREDGIVSPVKNQAHCGSCWTFSTTGALEAAYTQATGKNISLSEQQLVDCAGGFNNFGCNGGLPSQAFEYIKYNGGIDTEESYPY 234          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.125e-41
Identity = 91/177 (51.41%), Postives = 118/177 (66.67%), Query Frame = 2
Query:  194 LSFARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            L F  +  ++ K Y S+EE   R   F  N   I + N    +++LGLN+F+D S++E +   L +  QNCSAT KGN+       P + DWR+ G  VSPVK+QG CGSCWTFSTTG+LE+A   A GK +SL++QQLVDCAQ FNN GC GGLPSQAFEYI+Y+ G+  E+ YPY
Sbjct:   33 LHFKSWMVQHQKKY-SLEEYHHRLQVFVSNWRKINAHNAGNHTFKLGLNQFSDMSFDEIRHKYLWSEPQNCSAT-KGNYLRGTGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 207          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.173e-39
Identity = 86/175 (49.14%), Postives = 118/175 (67.43%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  + +++ K Y S  E   R   F+ N   I++ N +  ++++GLN+F+D S+ E +   L +  QNCSAT K N+       P + DWR+ G +VSPVK+QG CGSCWTFSTTG+LE+A   A GK ++L++QQLVDCAQ FNN GC GGLPSQAFEYI Y+ G+  E++YPY
Sbjct:   33 FTSWMKQHQKTYSS-REYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPY 205          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.173e-39
Identity = 87/175 (49.71%), Postives = 118/175 (67.43%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  + +++ K Y SVE    R   F+ N   I++ N +  ++++ LN+F+D S+ E +   L +  QNCSAT K N+       P + DWR+ G +VSPVK+QG C SCWTFSTTG+LE+A   A GK +SL++QQLVDCAQAFNN GC GGLPSQAFEYI Y+ G+  E++YPY
Sbjct:   33 FKSWMKQHQKTYSSVE-YNHRLQMFANNWRKIQAHNQRNHTFKMALNQFSDMSFAEIKHKFLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFNNHGCKGGLPSQAFEYILYNKGIMEEDSYPY 205          
BLAST of CB293541 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.532e-39
Identity = 88/175 (50.29%), Postives = 117/175 (66.86%), Query Frame = 2
Query:  200 FARFARRYGKIYESVEEMKLRFATFSKNLDLIRSTNCKGLSYRLGLNKFADWSWEEFQRHRLGAA-QNCSATTKGNHKLTADVLPETKDWRESG-IVSPVKDQGHCGSCWTFSTTGSLEAAYHQAFGKGISLSKQQLVDCAQAFNNQGCNGGLPSQAFEYIKYDGGLDTEEAYPY 718
            F  +  ++ K Y S EE   R   F+ NL  I + N +  ++++GLN+F+D S++E +R  L +  QNCSAT K N+       P + DWR+ G  V+PVK+QG CGSCWTFSTTG+LE+A   A GK   L++QQLVDCAQ FNN GC GGLPSQAFEYI+Y+ G+  E+ YPY
Sbjct:   35 FQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQNCSAT-KSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 207          
The following BLAST results are available for this feature:
BLAST of CB293541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
ALEU_ARATH1.411e-9372.69Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
ALEUL_ARATH7.003e-9370.43Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP3_SOLLC5.562e-8272.46Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
ORYC_ORYSJ2.760e-8170.19Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP2_MAIZE1.049e-8070.81Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEU_HORVU6.799e-8069.71Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CATH_PIG8.125e-4151.41Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_RAT1.173e-3949.14Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_MOUSE1.173e-3949.71Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATH_BOVIN1.532e-3950.29Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293541 ID=CB293541; Name=CB293541; organism=Citrus sinensis; type=EST; length=720bp
GCACTATGCATTAGGCATGGCTCGCCCCGTACAGTTGGTCTCGTCCGACA
TCTTGTTGCTTTGCTGCGCTGCCGCAGCATCAGCATCAGCATCAAGCTTC
GACGACTCCAATCCGATCAGATTGGTATCATCGGACGGTCTCCGTGACTT
CGAGACCTCCGTCCTCCAGGTGATCGGCCAAGCCCGCCATGCTCTCTCCT
TTGCCCGTTTTGCTCGCAGGTATGGGAAGATTTACGAGTCCGTTGAGGAG
ATGAAGCTCCGGTTCGCGACTTTCTCCAAGAACTTGGATTTAATCAGATC
TACCAATTGTAAAGGCCTATCTTACAGGCTCGGGTTGAACAAGTTTGCTG
ACTGGAGCTGGGAAGAGTTCCAAAGGCACAGGTTGGGAGCTGCGCAAAAC
TGCTCTGCCACTACAAAAGGAAATCACAAGCTTACTGCTGATGTGCTTCC
AGAAACGAAAGACTGGAGGGAATCTGGCATAGTAAGCCCAGTTAAAGACC
AAGGTCACTGTGGATCTTGCTGGACTTTCAGCACGACTGGATCTCTTGAG
GCTGCTTACCACCAGGCCTTTGGAAAGGGTATCTCTTTGTCAAAACAGCA
GCTTGTAGACTGTGCCCAAGCTTTCAACAACCAGGGATGCAATGGTGGGT
TGCCATCCCAAGCCTTTGAATACATCAAGTACGATGGTGGCCTTGATACT
GAGGAAGCATATCCCTACAC
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