CB293542

Overview
NameCB293542
Unique NameCB293542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293542_ssr614 microsatellite CB293542_ssr614:614..628. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:23..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293542 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.065e-17
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = -2
Query:  315 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 596
            MARSF+N K+ SA VADG SN   + G++AA+                M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          
BLAST of CB293542 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 44/96 (45.83%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  309 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 596
            MARS   AKL  A VADGIS +I +RGY+AA+                 L+    E +G+S   +W PDP+TG YRPEN A E+D A+LR M L H
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKND--LRPAVREDSGASS--AWAPDPITGYYRPENRAVEIDPAELREMLLNH 92          
BLAST of CB293542 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 40/100 (40.00%), Postives = 53/100 (53.00%), Query Frame = -2
Query:  309 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 596
            MARS S+ KL  A + DG+  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D A+LR M L H
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNH 100          
BLAST of CB293542 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = -2
Query:  309 MARSFSNAKLFSAFVADGISNAIYKRGYSAASQXXXXXXXXXXXXXXAMLKKPAEEMTGSSE----KVSWVPDPVTGVYRPENLANELDGADLRAMFLKH 596
            MARS S+ K   A V D +  +I +RGYS A                 + ++ A + + SSE      +W PDPVTG YRPEN   E+D ADLR M L H
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNH 100          
The following BLAST results are available for this feature:
BLAST of CB293542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARG2_PHAAU5.065e-1750.00Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
LEA5_CITSI1.686e-1245.83Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.093e-1140.00Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI7.084e-1140.00Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06bb03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293542 ID=CB293542; Name=CB293542; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTAAAATTGTAAATAATAAATCATCTTTATTCTCCTA
AAAATGGCAACAAAAAAACAGGAATGTTACATGCAATACAAAATCTAGTT
TGGATCCCCAAGTCAAAACAGAAAGAACAGGGGAGCTGCAGCTGCTACGC
CAATTTCCCGGAATTCCTCGAGAGCTCATGCGGCTGACCACATCAGAACG
AATCCCTTTTTAATCTTTTTTTAATTTTTCTTTCGTCCTTCCTCAGTTTC
CATGTCCGAATTAATATATATTAATAATAATACTTATTAATTTTGATGAT
CAGTTGTTGTGCTTCAAGAACATGGCTCTGAGGTCGGCCCCATCGAGCTC
GTTGGCGAGATTCTCCGGCCTGTAGACACCAGTGACTGGGTCTGGGACCC
ACGAGACCTTCTCACTGGATCCTGTCATCTCTTCTGCTGGTTTCTTCAAC
ATCGCAGCAGCACTCCTAGCTCCCCCTGTTGCCCGCGACACAGCGCCTTG
TGATGCCGCCGAGTATCCTCTTTTGTAGATGGCGTTAGAGATTCCGTCAG
CGACGAAAGCAGAGAAAAGCTTAGCGTTTGAGAAAGAGCGAGCCATTTTT
CTTAGTTATGTGGGATGATGATGATGATAAGAGATCTTAACGCTGCTGCA
GAAAGCAATTTCCTTCTATTCTTTCTATCGAAAAGCCTTCAACAGCAGCT
AAAGAAACTTCCCTCTTCGTAGCGCGAAAATCCCCTCAAAG
back to top