CB293550

Overview
NameCB293550
Unique NameCB293550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2369 contig Csv1_Contig2369:85..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.351e-19
Identity = 54/110 (49.09%), Postives = 66/110 (60.00%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            M++ ELAC YA LIL DDGIAIT +KIA +VKAAN+ +ESYWP+LFAKLLEKRN++DLI++                                     ESD+DMGFSLFD
Sbjct:    1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILS-VGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            +  ELAC+YA +IL D+GIAIT+DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    3 TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = -3
Query:  381 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMN 560
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 49/110 (44.55%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            MS SELACTYA LILHDDG+ IT D I  + KAA V +E YWP+LFAKL  K+++DDLI N                                       +EDMGFSLFD
Sbjct:    1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITN---VGAGGGAAPAAAAPAAGGAPAAGAAPKKEEKKEPSEEEDMGFSLFD 107          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA3_SCHPO (60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe GN=rpa3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            MSASELA +Y+ LIL D+GI IT+DK+  L KAANV +E  W ++FAK LE ++L +L++N                                     ESDEDMGF LFD
Sbjct:    1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 46/109 (42.20%), Postives = 54/109 (49.54%), Query Frame = -3
Query:  234 SASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 560
            S  ELAC YA LIL DD +AIT +KIA L+KAANV  E YWP LFAK LE  ++ +LI +                                     ESD+DMGF LFD
Sbjct:    3 SNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLITSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Aspergillus fumigatus GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 46/111 (41.44%), Postives = 55/111 (49.55%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVF-IESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            MS +ELAC+YA LIL DDG+ IT DKI  L+ AA V  +E  W SLFAK LE +++ DL+ N                                     ESDEDMGF LFD
Sbjct:    1 MSTAELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLLTNVGSGGAAAPAAVGGAAAGAAAPAEAAAAEEKKEEEKEESDEDMGFGLFD 111          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA1_SCHPO (60S acidic ribosomal protein P1-alpha 1 OS=Schizosaccharomyces pombe GN=rpa1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 45/110 (40.91%), Postives = 58/110 (52.73%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            MSASELA +Y+ LIL D+GI IT+DK+  L KAANV +E  W ++FAK LE ++L +L++N                                     ESDEDMGF LFD
Sbjct:    1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN-IGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109          
BLAST of CB293550 vs. ExPASy Swiss-Prot
Match: RLA5_SCHPO (60S acidic ribosomal protein P1-alpha 5 OS=Schizosaccharomyces pombe GN=rpa5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = -3
Query:  234 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVFIESYWPSLFAKLLEKRNLDDLIMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 563
            MSASELA +YA LIL D+GI IT+DK+  L KA NV +E  W ++FAK LE ++L +L++N                                     ESDEDMGF LFD
Sbjct:    1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN-IGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109          
The following BLAST results are available for this feature:
BLAST of CB293550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RLA1_MAIZE2.351e-1949.0960S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA13_ARATH2.200e-1771.6760S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH2.200e-1771.6760S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA11_ARATH2.200e-1771.6760S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA1_CHLRE1.092e-1644.5560S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA3_SCHPO6.625e-1440.9160S acidic ribosomal protein P1-alpha 3 OS=Schizos... [more]
RLA1_CAEEL2.518e-1342.2060S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]
RLA1_ASPFU9.567e-1341.4460S acidic ribosomal protein P1 OS=Aspergillus fum... [more]
RLA1_SCHPO1.249e-1240.9160S acidic ribosomal protein P1-alpha 1 OS=Schizos... [more]
RLA5_SCHPO1.632e-1240.9160S acidic ribosomal protein P1-alpha 5 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293550 ID=CB293550; Name=CB293550; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTAAAATAAAAATTGATCCACAATACTTGTATACA
TCCAGAATCTCGAACACACAATGCAGAACCAAAGCAACTACTTAACACTT
TCTGTTCACTCAAGGTTACCTATACTTCAAATCTTAACAAACAAAGATAG
ATACTACTAATAGGTCAAAAAGACAATTAATCTTAAGAGTTGTAAACCAG
CACCAAACCAAATCATTCTGAAAGGAGCTCCTAATCAAACAAGCTGAAGC
CCATATCTTCGTCACTTTCTTCCTTGGGTTCTTCCTTCTTCTCCTCCGGG
GGGGGAGCAGCAGCATCAGCCCCAGCACCTCCAGCAGGAGCTGCAACAGC
AACTGCACCACCGCCACCACCAAACCCCACATTCATTATAAGATCATCTA
AGTTCCGCTTCTCTAAGAGCTTAGCAAACAAACTAGGCCAGTAAGATTCA
ATAAACACGTTGGCAGCCTTCACCAGTTGTGCAATCTTATCCGTAGTAAT
GGCGATGCCGTCATCGTGGAGGATCAAACAGGCATAAGTACAAGCAAGCT
CCGAAGCCGACATTGCTTTGACTCAAGAGATCAGACCTACTGCGGATTGC
GCCGTGCACTCTGCTGCGCCGCTGCCTCGTG
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