CB293553

Overview
NameCB293553
Unique NameCB293553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10287 contig Csv1_Contig10287:15..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB293553 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.840e-66
Identity = 134/238 (56.30%), Postives = 171/238 (71.85%), Query Frame = 2 
Query:   65 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLVDALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHD---GPQSYVTGIPVPPINPSRG-SDLFPGPGAGMYPRRGGFGGDGSMLIGPDHPGFF 763
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLLVDA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPPI  + G SDLFPGPGAGMYP RGGF GDGSML+GP  P FF
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMYPGRGGF-GDGSMLVGPTDPRFF 235
The following BLAST results are available for this feature:
BLAST of CB293553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH4.840e-6656.30Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293553 ID=CB293553; Name=CB293553; organism=Citrus sinensis; type=EST; length=774bp
GGAAACAAGACCTCGCTCTCTCATAAACTCTAAAAACAAAGACAGGAAAA
AAATTAAAAAAAAAATGCCGAACGAGAAATCAGTGATGGCCGTGATAAGA
GCGGCAAGACCTACCTTTCGAAACGACTTCGATAAAATTGCATTTGTCGT
TCACGCCTCTTTCCTTGCCAGTGGACACGTGTTAACCGCCACTGGACCTG
CCGCGGACACCGAGTTCACCTCTCCCTCCTCCTCCACCGATGAAGTAGGA
ATTGATCACTGGAACGAACTAGCTGATGATAATTACGCGTTTCTGTTTAT
AAACCCTGAGAAAGGTTCAAAGAAAGTGTTGGTGAAGTGTCTCGTGATGA
ACAGTAAATTGCTGGTTGATGCATTAGCTGAGGGAGCTTCGGAGCCTGTG
CATCTCGAAATCAATGTTGCAGACTACGTTGCAGAAAATGGAGGCAATTA
CTCTGATAAGTTCAAGAATTTAGAGAAGCTTGTGACAGATCTTGATAAAG
ACATTATTTCAAAATTATACGGCTCCCCAAAAACAGCTAGCTCAGAAAGA
TGTGAAGGATCAAGGCCTATTGTAACCGATCCTGCTTTTGGATTTGAGCA
TGACGGGCCTCAATCTTATGTTACAGGAATTCCTGTTCCTCCTATCAACC
CAAGTCGTGGTAGCGATCTTTTTCCTGGCCCTGGTGCTGGAATGTATCCT
AGAAGGGGTGGCTTTGGCGGTGATGGGAGCATGCTAATAGGACCTGATCA
TCCTGGCTTTTTTGGTGGAATTGG
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