CB293554

Overview
NameCB293554
Unique NameCB293554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293554_ssr184 microsatellite CB293554_ssr184:184..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13614 contig Csv1_Contig13614:239..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.998e-29
Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = -2
Query:  336 ESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEV-MGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRKILTGS 797
            ESL+I+EYIDE WK NP+LP DPY+RA ARFW+KF D+K V  V    F    +E+EK   +  E L+ LE  L+ K FFGG++ G +DIA  +I  W  I +EIAG+ L  +E  P+L  W   FL  P +   +P    L  + K   + L+ S
Sbjct:   69 ESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.231e-28
Identity = 66/142 (46.48%), Postives = 88/142 (61.97%), Query Frame = -2
Query:  375 ESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 797
            ES++I+EYIDE ++   +LP+DPY+RA ARFWAKF D+K VP V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +  W  + EE +GV L+ +E  P    W   ++    IK  +P   ELL
Sbjct:   65 ESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDK-VPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELL 205          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.582e-27
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = -2
Query:  375 ESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 797
            ES++I+EYIDE ++   +LP+DPY+RA ARFW+KF  +K V  V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +G W  + EE  GV L+ +E  P  + W + ++    +K  +PS  ELL
Sbjct:   65 ESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELL 205          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.979e-27
Identity = 63/142 (44.37%), Postives = 87/142 (61.27%), Query Frame = -2
Query:  375 ESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 797
            ES++I+EYIDE ++   +LP+DPY+RA ARFWAKF D+K V  V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +G W  + EE  G  L+ +E  P  + W + ++    +   +P   ELL
Sbjct:   65 ESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDK-VAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELL 205          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.352e-23
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = -2
Query:  369 ESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKC--VPEVMGAFASKGEEQEKAAKARENLKMLERALEGKPFFGGDKIGFLDIAV----------GWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEH 797
            ES +I+EYIDE W QNP+LP+DPYER+ ARF+AK  DE+   V  +  A A +   +  A + RE +  LE+ L GK +FGG  +GFLD             GW GI         G+ +I  E  P    W+ N  +V ++K C+P   E +EH
Sbjct:   68 ESHVILEYIDETWPQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPFCLERGWEGI---------GLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEH 213          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.129e-23
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = -2
Query:  426 ESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKA-AKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNF 797
            ES++I+EYIDEA++   +LP+DPY+RA ARFWAK+ ++K    V  +F SKGEEQEKA  +A E LK+L+   + K  F GDK GF DI      ++  I+EE++G+ L  +E  P   AW + +
Sbjct:   65 ESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDKGA-AVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKFPNFCAWRDEY 188          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.722e-21
Identity = 61/142 (42.96%), Postives = 80/142 (56.34%), Query Frame = -2
Query:  378 ESLLIIEYIDEAWKQN-PLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAKA-RENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHEL 797
            ESL I+EYIDE W    PLLP DPYER+ ARFWA + D+K        ++ KGE+QE+A K   E LK LE  L  K +FGGD +GF+D+A+     W    E  A  S I+AE  P L  W    +E   +   +P  H++
Sbjct:   67 ESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFS-IEAE-CPKLVVWAKTCMESESVSKSLPHPHKI 206          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.836e-21
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = -2
Query:  393 ESLLIIEYIDEAWK-----QNPLLPEDPYERANARFWAKFFDEKCVPEVMGA-FASKGEEQEKAAKARE--NLKMLERAL----EGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIP 797
            ES +I++YIDE W      +  ++P DPYERA ARFWA + D+K  P  +   F SK EE+  AA A+    L+ LE A     +GKPFFGGD +GF+D+ +G    W   ++++ G  LID    P L AW   F      K  +P
Sbjct:   68 ESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVP 214          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.458e-20
Identity = 61/152 (40.13%), Postives = 84/152 (55.26%), Query Frame = -2
Query:  351 ESLLIIEYIDEAWKQNP--LLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRK 797
            ES++ +EYI+E WK     LLP DPY+RA ARFWA + D+K        +A+KGEEQE A K   E LK+LE AL  +P+FGG+  GF+DIA+     W    E     S  +AE  P   AW    ++   +   +P   ++LE  K  R+
Sbjct:   67 ESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFS-TEAE-CPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQ 216          
BLAST of CB293554 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.486e-20
Identity = 61/152 (40.13%), Postives = 83/152 (54.61%), Query Frame = -2
Query:  351 ESLLIIEYIDEAWKQNP--LLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRK 797
            ES++ +EYI+E WK     LLP DPY+RA ARFWA + D+K        + +KGEEQE A K   E LK+LE AL  KP+FGG+  GF+DIA+     W    E     S  +AE  P   AW    ++   +   +P   ++LE  K  R+
Sbjct:   67 ESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFS-TEAE-CPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQ 216          
The following BLAST results are available for this feature:
BLAST of CB293554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GSTX6_SOYBN4.998e-2943.59Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX1_TOBAC4.231e-2846.48Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC3.582e-2745.07Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC7.979e-2744.37Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_ARATH5.352e-2339.35Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX1_SOLTU9.129e-2345.60Probable glutathione S-transferase OS=Solanum tube... [more]
GSTXA_TOBAC1.722e-2142.96Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTU6_ORYSJ3.836e-2140.14Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTXC_TOBAC1.458e-2040.13Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC2.486e-2040.13Probable glutathione S-transferase OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293554 ID=CB293554; Name=CB293554; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTGTGAATCTACCCCATGACCAGAGGTCTCAGGAAA
TTTTATTGGTTGTTTGAAACTTCAGTTACAGTATTTAAATGGAAGCAAAG
CATTTTGCCACATTTGTGCAGCTTCTAGTTTTATGGATGTTGCTTGAGCA
GTGGCGACAGTTAACAATAATGTACCATATATGATATATATATAGTCTAG
AAGACATTCATACAAACCTATGAAGGATCATGCCTTATTTATGATAATAT
TTAGTCTAAAAGCAGTATTTATAAATCATATTAAGAAACCTTCATGCATG
GGCAACCGCTGATGATGGTAGAGACTTCAAGTTGATGAACCTGTCAAGAT
CTTGCGGAAGCCTTTATTGTGCTCAAGCAATTCGTGCCAAGATGGTATGC
ATGCTTTGATAACAGGAACTTCAAGAAAATTGTTCAACCAAGCAGTAAGC
AAAGGCATCGTCTCTGCATCAATCAGGCTGACACCTGCAATTTCCTCAAC
AATTCGACCCCAGATTCCAATCCACCCCACAGCAATGTCCAGAAAGCCTA
TCTTGTCACCACCAAAAAAGGGCTTCCCCTCCAGAGCCCTTTCCAGCATC
TTCAGATTCTCTCGAGCTTTTGCAGCTTTCTCTTGTTCCTCCCCTTTTGA
GGCAAATGCTCCCATGACTTCAGGTACACACTTCTCATCAAAGAATTTTG
CCCAGAAACGTGCATTGGCCCGTTCGTAAGGATCTTCTGGGAGGAGAGGA
TTTTGTTTCCACGCTTCATCAATGTATTCGATGATCAGTAGTGATTCT
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