CB293556

Overview
NameCB293556
Unique NameCB293556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10531 contig Csv1_Contig10531:148..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.358e-55
Identity = 108/191 (56.54%), Postives = 133/191 (69.63%), Query Frame = -2
Query:  257 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 829
            F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP            + S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY + GYLPLVP+DDI KA+++
Sbjct:   18 FVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.145e-29
Identity = 77/205 (37.56%), Postives = 105/205 (51.22%), Query Frame = -2
Query:  260 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFK 829
            F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GY V  YLPL+P + IAK F+
Sbjct:   25 FVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 77/208 (37.02%), Postives = 107/208 (51.44%), Query Frame = -2
Query:  257 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 829
            F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   27 FVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.377e-21
Identity = 65/177 (36.72%), Postives = 86/177 (48.59%), Query Frame = -2
Query:  263 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRK---FDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 784
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP             A RK    D H P   K+V+SQ  S++            E +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKY-------ADRKVGELDRHVPSNVKKVSSQARSVVS-----------EVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.198e-20
Identity = 67/198 (33.84%), Postives = 100/198 (50.51%), Query Frame = -2
Query:  263 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 829
            F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            ++ ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   40 FVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.198e-20
Identity = 67/198 (33.84%), Postives = 100/198 (50.51%), Query Frame = -2
Query:  263 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 829
            F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP            ++ ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F
Sbjct:   40 FVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF 232          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 61/189 (32.28%), Postives = 92/189 (48.68%), Query Frame = -2
Query:  263 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAF 829
            F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + I K F
Sbjct:   15 FVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of CB293556 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.240e-17
Identity = 60/199 (30.15%), Postives = 94/199 (47.24%), Query Frame = -2
Query:  257 FMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXDASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYPVFGYLPLVPIDDIAKAFKQ 829
            F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP            D     + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y    YLP++PI+ I+   +Q
Sbjct:   46 FIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229          
The following BLAST results are available for this feature:
BLAST of CB293556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH4.358e-5556.54REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI3.145e-2937.56Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH3.254e-2637.02REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_PHAVU5.377e-2136.72Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y5513_ORYSJ1.198e-2033.84REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.198e-2033.84REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR8.584e-1932.28Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH1.240e-1730.15REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06bb12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293556 ID=CB293556; Name=CB293556; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTTTTTTTTTTTTATGAACCATTTATCTCCATTCACATCTGGTGGA
AAACCAAGTCTTAAAGGGCATTTACAGATTACAACCCATAGTGCCACCAC
CCGGCCACACCTTCAAGCCTAGAATTTTGAAAACCAGACCACTAGATGAA
GCAAACTCATCAGACAAAAAGTAAATTCTTAGTCAGAATCTGAGCTTGAA
TCCTTTTCCTTTGCATCTTCTTTCTCTGGAGCATCTTCTTTCTTGGGAGC
TTCACTCTGCTTAAAAGCTTTGGCTATGTCATCAATGGGAACCAAAGGAA
GATAGCCAAAGACTGGGTAACCCTTCTTCGTCATCTCCACGACAAGATGG
TTATACTTCTTGGACCACTGTGCAGCTGTGGGAACAGCCATATCTGCCAT
TGTGTGGAACAATGCATAGTGGTTTAGTTTATACCATGCTTTCACGGAAT
TTGTTAGCAGAAGGTGTTTAGACTCAGCAGCAGCATAATGGACAGCTGCT
CGAGGCCCCCCGGTTTGGGCCTCAATCACAAGCTTTTGAGCTTTCTGTGA
TGCTGTTTCAATTAGACTATGTACTTGGCTGGCAACCCGCTTGGCCAAAG
GGGGAGCGTGCTCGTCAAACTTGCGTGAAGCATCATCCACCTTCTTATCA
AGAAAAACGAGGAGATCATCAGGCACGCCCTTGAATTTCTGATAAACAGG
TCCCACGACGGCAGTCACGGCGCTTTCGACAGTCCCAACCGGCGAGCGTA
GCGGCCCCGAGTTGCGTTTTGCGTAGTCGTACAAACTCGACACGCACACC
AGAGCCTTAATCGCGGCTATCCTCATAAAT
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