CB293587

Overview
NameCB293587
Unique NameCB293587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293587_ssr64 microsatellite CB293587_ssr64:64..81. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293587_ssr54 microsatellite CB293587_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10798 contig Csv1_Contig10798:7..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.449e-75
Identity = 130/172 (75.58%), Postives = 144/172 (83.72%), Query Frame = 3
Query:  153 TENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIA---TSSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            T+NG+QNG LE LC N        D L+WGV AE +KGSHL+EVKRMVA+YRKP V LGGETLT+AQVA+IA   T    VEL+ESAR GVKASS+WVM+SM+KGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGNGTE+ HTLPHS TRAAMLVR+NTLLQGY
Sbjct:    5 TKNGYQNGSLESLCVNQR------DPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGGETLTIAQVASIAGHDTGDVKVELSESARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGY 170          

HSP 2 Score: 48.9062 bits (115), Expect = 2.449e-75
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAIT+LLN+NITPCLP
Sbjct:  171 SGIRFEILEAITRLLNNNITPCLP 194          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 2.442e-72
Identity = 122/154 (79.22%), Postives = 134/154 (87.01%), Query Frame = 3
Query:  201 DNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT-SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            +N   ++ D LNWGV AE +KGSHL+EVKRMV EYRKP V LGGETLT++QVAAIA      VEL+ESAR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGNGTES+HTLPH+ TRAAMLVR+NTLLQGY
Sbjct:   27 NNMKVNAADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDGATVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGY 180          

HSP 2 Score: 50.0618 bits (118), Expect = 2.442e-72
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKLLN+NITPCLP
Sbjct:  181 SGIRFEILEAITKLLNNNITPCLP 204          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.185e-72
Identity = 126/173 (72.83%), Postives = 143/173 (82.66%), Query Frame = 3
Query:  156 ENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIA-----TSSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            +NGH NG    LCK    + +  D LNW + AE+L+GSHL+EVK+MV E+RKP V LGGETLTVAQVA+IA     ++   VEL+ESAR GVKASS+WVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQKELI FLNAG+FGNGTESSHTLPHS TRAAMLVR+NTLLQGY
Sbjct:    7 QNGHVNGEAMDLCKK---SINVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGY 176          

HSP 2 Score: 48.521 bits (114), Expect = 3.185e-72
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKL+N NITPCLP
Sbjct:  177 SGIRFEILEAITKLINSNITPCLP 200          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.214e-72
Identity = 127/173 (73.41%), Postives = 142/173 (82.08%), Query Frame = 3
Query:  159 NGHQNGGLE-GLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT-----SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            NGH NGG    LCK       S D LNW + AE+L+GSHL+EVK+MV+E+RKP V LGGE+LTVAQVAAIA      +   VEL+E AR GVKASS+WVM+SMNKGTDSYGVTTGFGATSHRRTKNGGALQKELI FLNAG+FGNGTE+SHTLPHS TRAAMLVR+NTLLQGY
Sbjct:    4 NGHVNGGENFELCKK------SADPLNWEMAAESLRGSHLDEVKKMVSEFRKPMVKLGGESLTVAQVAAIAVRDKSANGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTETSHTLPHSATRAAMLVRINTLLQGY 170          

HSP 2 Score: 48.521 bits (114), Expect = 9.214e-72
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITKL+N NITPCLP
Sbjct:  171 SGIRFEILEAITKLINSNITPCLP 194          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 9.218e-72
Identity = 128/173 (73.99%), Postives = 138/173 (79.77%), Query Frame = 3
Query:  156 ENG-HQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATSS----TNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            ENG H NG   G C  D         LNWGV AE L GSHL+EVK+MV E+RKP V LGGETLTV+QVA I+ +       VEL+E+AR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELI FLNAGIFGNGTESSHTLPHS TRAAMLVR+NTLLQGY
Sbjct:    2 ENGTHVNGSANGFCIKD--------PLNWGVAAEALTGSHLDEVKKMVGEFRKPVVKLGGETLTVSQVAGISAAGDGNMVKVELSEAARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGY 166          

HSP 2 Score: 48.521 bits (114), Expect = 9.218e-72
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITK LN+NITPCLP
Sbjct:  167 SGIRFEILEAITKFLNNNITPCLP 190          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PALY_CAMSI (Phenylalanine ammonia-lyase OS=Camellia sinensis GN=PAL PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 4.533e-71
Identity = 129/177 (72.88%), Postives = 138/177 (77.97%), Query Frame = 3
Query:  135 MERGATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT--SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            M+      NG  +GG  G C  D         LNWGV AE +KGSHLEEVK MV E+RKP V LGGETLT++QVAAIA   S   VEL+ESAREGVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGNGTES HTLP S TRAAMLVR+NTLLQGY
Sbjct:    1 MDSTTAIGNGVGSGGSPGFCLKD--------PLNWGVAAEAMKGSHLEEVKGMVEEFRKPVVRLGGETLTISQVAAIAVRGSEVAVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTESCHTLPQSATRAAMLVRINTLLQGY 169          

HSP 2 Score: 46.9802 bits (110), Expect = 4.533e-71
Identity = 21/24 (87.50%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAI+K LN+NITPCLP
Sbjct:  170 SGIRFEILEAISKFLNNNITPCLP 193          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL1_DAUCA (Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=PAL1 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.533e-71
Identity = 124/161 (77.02%), Postives = 135/161 (83.85%), Query Frame = 3
Query:  192 CKNDNYNYSSG-----DALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATSSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            C+N N    +G     D LNWG+ AE L GSHL+EVKRMVAE+RKP V LGGETLTV+QVAAIA  S  VELAESAR GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFG+G +SS+ LPHS TRAAMLVR+NTLLQGY
Sbjct:    3 CENKNVVLGNGLCMQKDPLNWGMAAEALTGSHLDEVKRMVAEFRKPMVQLGGETLTVSQVAAIAAGSVKVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGNDSSNILPHSATRAAMLVRINTLLQGY 163          

HSP 2 Score: 48.1358 bits (113), Expect = 4.533e-71
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITK LN NITPCLP
Sbjct:  164 SGIRFEILEAITKFLNQNITPCLP 187          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 5.911e-71
Identity = 128/177 (72.32%), Postives = 141/177 (79.66%), Query Frame = 3
Query:  147 ATTENGHQNGGLEGLC----KNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATSS--TNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            A T+N   N G +  C    KN+N   S  D LNWGV AE +KGSHL+EVKRMV EYRKP V LGGETLT++QVAAIA       VEL+ESAR GVKASS+WVMESMNKGTDSYGVTT  GATSHRRTK GGALQKELI FLNAGIFGNG+ES+HTLPH+ TRAAMLVR+NTLLQGY
Sbjct:    7 AITKN---NSGYDSFCLTNAKNNNIKVSDSDPLNWGVAAEAMKGSHLDEVKRMVDEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNGSESTHTLPHTATRAAMLVRINTLLQGY 180          

HSP 2 Score: 46.2098 bits (108), Expect = 5.911e-71
Identity = 20/23 (86.96%), Postives = 23/23 (100.00%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCL 729
            SGIRFEILEAITKL+N+N+TPCL
Sbjct:  181 SGIRFEILEAITKLINNNVTPCL 203          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.710e-71
Identity = 127/173 (73.41%), Postives = 136/173 (78.61%), Query Frame = 3
Query:  147 ATTENGHQNGGLEGLCKNDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIATSSTNV--ELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            A  ENGH   G  G C   N      D LNW   AE LKGSHL+EVKRMV E+RK  V LGGETLT++QVAAIA     V  +LAES+R GVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGNGTES+HTLPHS TRAAMLVR+NTLLQGY
Sbjct:    3 AVVENGHH--GNNGFCVKQN------DPLNWVAAAEELKGSHLDEVKRMVEEFRKTVVKLGGETLTISQVAAIAARDNEVAVQLAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESTHTLPHSATRAAMLVRINTLLQGY 167          

HSP 2 Score: 49.6766 bits (117), Expect = 7.710e-71
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILE ITK LNHNITPCLP
Sbjct:  168 SGIRFEILETITKFLNHNITPCLP 191          
BLAST of CB293587 vs. ExPASy Swiss-Prot
Match: PAL2_LITER (Phenylalanine ammonia-lyase 2 OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.006e-70
Identity = 121/156 (77.56%), Postives = 134/156 (85.90%), Query Frame = 3
Query:  198 NDNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPEVNLGGETLTVAQVAAIAT--SSTNVELAESAREGVKASSNWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIIFLNAGIFGNGTESSHTLPHSTTRAAMLVRVNTLLQGY 659
            N    +   D LNWG+ AE++KGSHL+EVK+MVAE+RKP V L G+TLT+AQVAAIA       VELAE+AREGVKASS+WVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELI FLNAGIFGNGTE+SHTLPHS TRAAMLVR+NTLLQGY
Sbjct:    5 NGKMEFCMKDPLNWGMAAESMKGSHLDEVKKMVAEFRKPVVQLAGKTLTIAQVAAIAARDDGVTVELAEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETSHTLPHSATRAAMLVRINTLLQGY 160          

HSP 2 Score: 47.3654 bits (111), Expect = 1.006e-70
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1
Query:  661 SGIRFEILEAITKLLNHNITPCLP 732
            SGIRFEILEAITK LN NITPCLP
Sbjct:  161 SGIRFEILEAITKFLNTNITPCLP 184          
The following BLAST results are available for this feature:
BLAST of CB293587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PALY_POPTR2.449e-7575.58Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PALY_TRISU2.442e-7279.22Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PAL5_SOLLC3.185e-7272.83Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL1_TOBAC9.214e-7273.41Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_HELAN9.218e-7273.99Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PALY_CAMSI4.533e-7172.88Phenylalanine ammonia-lyase OS=Camellia sinensis G... [more]
PAL1_DAUCA4.533e-7177.02Phenylalanine ammonia-lyase 1 OS=Daucus carota GN=... [more]
PAL2_PEA5.911e-7172.32Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]
PALY_DIGLA7.710e-7173.41Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL2_LITER1.006e-7077.56Phenylalanine ammonia-lyase 2 OS=Lithospermum eryt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bd07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293587 ID=CB293587; Name=CB293587; organism=Citrus sinensis; type=EST; length=732bp
CGCCCTATTGAGACTTCCGAATTTCCTTTAGCTCATTCATTCTTCATCAC
TCCCATTCATTCATTCTTCTTCTTCTTCTTCTTTCTACAGATTTGGTATT
TTTTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGAGAGGTGCCA
CTACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAAT
GACAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGC
GGAGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGG
AGTACAGGAAGCCGGAGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCA
CAGGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGGCGGAATC
TGCCAGGGAAGGCGTCAAGGCCAGCAGTAATTGGGTGATGGAGAGCATGA
ATAAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGCGCCACTTCT
CATCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTATATT
TTTGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTAC
CTCACTCAACAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTC
CAGGGCTACCTCTGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGC
TGCTCAATCACAACATCACTCCATGCCTCCCT
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