CB293591

Overview
NameCB293591
Unique NameCB293591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig161 contig Csv1_Contig161:235..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_IPOBA (ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 8.251e-62
Identity = 122/193 (63.21%), Postives = 147/193 (76.17%), Query Frame = -1
Query:  248 KEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPIHF 826
            KEQK+KVPL ++G SGNYASALY+AAVK+N LEKVESE+ DLVEASKK+ T+ QF +D SVP +TRVNAI EIC QAKF D T++FL++LAENGRL+++D I KRF ELTMAH+GEVK TVT+VI                 +           +DP+ILGGLVVEFGQKVFDMSI+ RARQMERFLREP++F
Sbjct:   52 KEQKIKVPLTMYGVSGNYASALYLAAVKSNTLEKVESELYDLVEASKKSPTFSQFMRDPSVPVDTRVNAIKEICAQAKFGDTTQNFLLILAENGRLKHIDRIVKRFKELTMAHRGEVKATVTTVIPLPADEEKELKATLQEMVGQGKSVQIEQKIDPTILGGLVVEFGQKVFDMSIRTRARQMERFLREPLNF 244          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_ARATH (ATP synthase subunit O, mitochondrial OS=Arabidopsis thaliana GN=At5g13450 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.366e-48
Identity = 102/197 (51.78%), Postives = 134/197 (68.02%), Query Frame = -1
Query:  239 QKEQKVKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPIHFGTL 829
            Q    VKVP+AL G +GN+AS LYIAAVK N+LEK+E+++ +++EA K A  + QFTKD SVP  TR+ AI + C QAKF++ TK+FL +LAENG+L+NLD I K+F++LT AH+G+VKV VT+VI                 +           +DPSI GGL+VEF QKV DMSI+ RA+QMER LREP+ F  L
Sbjct:   42 QTTANVKVPIALVGENGNFASWLYIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEPTKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIPLPPAEEKELTETLQEIIGAGKKITVEQKIDPSIYGGLIVEFQQKVLDMSIRTRAQQMERLLREPVDFNNL 238          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_PONAB (ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.197e-22
Identity = 63/185 (34.05%), Postives = 95/185 (51.35%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V ++N+I  + +FS +T + + +LAENGRL N   +   F  +  AH+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K + +++ R +RE
Sbjct:   28 VRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAAPVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSAHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLSRAMRE 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_HUMAN (ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.347e-22
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V ++N+I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVTS                   L            DPSILGG++V  G+K  DMS+K + +++ R +RE
Sbjct:   28 VRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPY-VKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMRE 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_RHIFE (ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.142e-21
Identity = 58/185 (31.35%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            +    +V ++N++ T+ KFS +T + + +LAENGRL N   +   F  +   H+GEV  +VT+                   L            DPSI+GG+++  G+K  DMS K + +++ R +RE
Sbjct:   28 VRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLKEPKMAASIMNPY-IKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMGGMIIRIGEKYVDMSAKTKIQKLSRVMRE 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_BOVIN (ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.056e-20
Identity = 59/185 (31.89%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V +++++  + KFS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L           +DPSI+GG++V  G+K  DMS K + +++ R +RE
Sbjct:   28 VRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 58/185 (31.35%), Postives = 94/185 (50.81%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K N LE+VE E+L + +  K+            V    +V +++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                   L           VDPSI+GG++V  G+K  DMS K + +++ R +RE
Sbjct:   28 VRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASIMNPY-VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_CALJA (ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.333e-19
Identity = 58/187 (31.02%), Postives = 93/187 (49.73%), Query Frame = -1
Query:  254 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 814
            V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +V ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS K + +++ + +RE I
Sbjct:   28 VRPPVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_CALMO (ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.740e-19
Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = -1
Query:  254 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLREPI 814
            V+ P+ ++G  G YA+ALY AA K   LE+VE E+L + +  K+            V    +V ++++I  + +FS +T + + +LAENGRL N   +   F  +   H+GE+  TVT+                   L            DPSI+GG++V  G+K  DMS K + +++ + +RE I
Sbjct:   28 VRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPKVAASVLNPY-VKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMGGMIVRIGEKYVDMSAKTKIQKLSKAMREVI 213          
BLAST of CB293591 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.273e-19
Identity = 57/185 (30.81%), Postives = 91/185 (49.19%), Query Frame = -1
Query:  260 VKVPLALFGGSGNYASALYIAAVKTNALEKVESEILDLVEASKKADTYFQFTKDLSVPAETRVNAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKFRARQMERFLRE 814
            V+ P+ ++G  G YA+ALY AA K N L++VE E+L + +  K+            V    +V +I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS + + +++ + +RE
Sbjct:   28 VRPPIQIYGVEGRYATALYSAASKQNKLDQVEKELLRVAQLLKEPKLAASILNP-HVKRAIKVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASALPEATLSELKTVLQSFLSKNQVLKLEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSKAMRE 211          
The following BLAST results are available for this feature:
BLAST of CB293591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ATPO_IPOBA8.251e-6263.21ATP synthase subunit O, mitochondrial OS=Ipomoea b... [more]
ATPO_ARATH1.366e-4851.78ATP synthase subunit O, mitochondrial OS=Arabidops... [more]
ATPO_PONAB2.197e-2234.05ATP synthase subunit O, mitochondrial OS=Pongo abe... [more]
ATPO_HUMAN8.347e-2233.51ATP synthase subunit O, mitochondrial OS=Homo sapi... [more]
ATPO_RHIFE4.142e-2131.35ATP synthase subunit O, mitochondrial OS=Rhinoloph... [more]
ATPO_BOVIN2.056e-2031.89ATP synthase subunit O, mitochondrial OS=Bos tauru... [more]
ATPO_PIG1.333e-1931.35ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]
ATPO_CALJA1.333e-1931.02ATP synthase subunit O, mitochondrial OS=Callithri... [more]
ATPO_CALMO1.740e-1930.48ATP synthase subunit O, mitochondrial OS=Callicebu... [more]
ATPO_SORAR2.273e-1930.81ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bd10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bd10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293591 ID=CB293591; Name=CB293591; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTAAACAAAAAATGTTGCCGTCCATCAAAACCATT
TGCCATGAAAGCAAAGTGATCAAAATGTGAATTTTATTTTGCCAATGATT
CAATTCATTCAGAAATGGCGGAGCACAAGCAAACAGCACCAAACAAAAGC
ATGAATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTTGCATAATCATC
TTGAAAATTTGGGCCCTGGGGCTGTGGCAGCCTTTTTAGAGGGTGCCAAA
ATGAATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGCCCTAAACTTAA
TGGACATGTCAAACACCTTTTGCCCAAACTCTACTACGAGCCCACCAAGA
ATGCTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTCCCTTGGCCAAG
TGTCTCTTGCAGTGTCTCTTTCAACTCTTTCTCTTCTTCTGGGGGAAGTG
GAATAACGGATGTAACAGTAACTTTTACTTCGCCCTTGTGTGCCATGGTT
AACTCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTAAGCCTCCCATT
CTCAGCCAAAACAACCAAGAAGTGCTTCGTAACATCTGAAAATTTAGCCT
GAGTACAGATTTCGTTAATGGCATTAACTCTCGTCTCTGCAGGCACAGAC
AAGTCCTTTGTGAACTGAAAATATGTATCAGCCTTCTTTGAAGCCTCAAC
AAGGTCAAGAATCTCAGACTCAACCTTCTCCAGTGCGTTAGTTTTCACTG
CCGCAATGTACAGAGCAGAAGCATAATTTCCTGAACCTCCAAACAAAGCC
AGGGGCACCTTAACTTTCTGCTCCTTCTGCAA
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