CB293599

Overview
NameCB293599
Unique NameCB293599
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig250 contig Csv1_Contig250:3..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293599 vs. ExPASy Swiss-Prot
Match: DDRGK_MOUSE (DDRGK domain-containing protein 1 OS=Mus musculus GN=Ddrgk1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.863e-24
Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = -2
Query:  464 EEEAAALEFEKW---KGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSNQFI 829
            +EE A  E E++   K  F ++ EG +E   ++     L +F+ YIKK K + LEDLA +  LRTQ+ INRI  L   G L+GV+DDRGK+IYI+  E+ AVA++I+++GRVSI+ LA  SN  I
Sbjct:  179 QEEQARREHEEYLKLKEAFVVEEEGVSETMTEEQSHSFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPEELAAVANFIRQRGRVSITELAQASNSLI 303          
BLAST of CB293599 vs. ExPASy Swiss-Prot
Match: DDRGK_HUMAN (DDRGK domain-containing protein 1 OS=Homo sapiens GN=DDRGK1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = -2
Query:  464 EFEKWKGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSNQFI 808
            E+ K K  F ++ EG  E   ++  +  L +F+ YIK+ K + LEDLA++  LRTQ+ INRI  L   G ++GV+DDRGK+IYI+  E+ AVA++I+++GRVSI+ LA  SN  I
Sbjct:  188 EYLKLKEAFVVEEEGVGETMTEEQSQSFLTEFINYIKQSKVVLLEDLASQVGLRTQDTINRIQDLLAEGTITGVIDDRGKFIYITPEELAAVANFIRQRGRVSIAELAQASNSLI 302          
BLAST of CB293599 vs. ExPASy Swiss-Prot
Match: YO87_CAEEL (Uncharacterized protein ZK1236.7 OS=Caenorhabditis elegans GN=ZK1236.7/C30C11.3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.848e-21
Identity = 50/119 (42.02%), Postives = 81/119 (68.07%), Query Frame = -2
Query:  452 EFEKWKGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLET 808
            E+   K  F+I+ EGT   E ++ + +L+ DFV+Y+K +K + +++L++ F L++++ +NR+      G + GVMDDRGK+IYIS  E  AVA +I ++GRVSI  +A +SN+ I LET
Sbjct:  202 EYLAMKASFAIEEEGTDAIEGEEAE-NLIRDFVDYVKTNKVVNIDELSSHFGLKSEDAVNRLQHFIEEGLVQGVMDDRGKFIYISDEEFAAVAKFINQRGRVSIHEIAEQSNRLIRLET 319          
The following BLAST results are available for this feature:
BLAST of CB293599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
DDRGK_MOUSE8.863e-2446.40DDRGK domain-containing protein 1 OS=Mus musculus ... [more]
DDRGK_HUMAN1.671e-2246.09DDRGK domain-containing protein 1 OS=Homo sapiens ... [more]
YO87_CAEEL1.848e-2142.02Uncharacterized protein ZK1236.7 OS=Caenorhabditis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06be03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293599 ID=CB293599; Name=CB293599; organism=Citrus sinensis; type=EST; length=830bp
CCCTGAGTTTTNTTTTTTTTTTTTTCAATGGTAAAGTGTATTGATGGCTA
ATCCTTAACACTGATCAGGAGTACCGTTAAATATATTCCAATCGATATTG
ATAATTAAACTAATATCAAGAGGACAAAAAAAAAAAGGAAAAAGAGAGAA
ATATACAATTTAACTTCCTATCATCTTTTTGTAAAAGTTTTTTAAATAAA
TGTTCAACACACTTCCTAGGTCAAAAGGGTCCATGCCCCTACCAGTCTCC
AGTGCCTCAATGTTCAGTGCCCCTGTTTTTCAGTAGCCTATCATGAGAAT
CTACACGTGAATTTATGGAATTTTTCCATTCTTTCCCATACTCATTTTGT
GTTCAAACCCTATACGTATGTGACATGAATTGAGGGCATACTTGAAGTCA
AGCAACAGAAATCTCCTCCCCACCGCTGAGATCCTCAACAAACTGTGCTT
TTGTTTCCAAATCAATGAACTGGTTGGACTTACTAGCTAAGTGCGATATG
CTAACTCTTCCCTGGCGCTTAATGTAGTCGGCTACAGCTTTCATCTCTGC
CTGTGAGATGTATATGTATTTTCCTCTATCATCCATGACACCAGAAAGTC
GCCCCATATTTTCAAGAGAGGTAATCCGATTGATACACTCCTGGGTCCGC
AACTTAAATTCTGCAGCAAGATCTTCTAAAGGAATACATTTGTGTTTCTT
TATATACTCCACGAAGTCAGCCAGCAAGTCCCGATCTCCATCTTGCACTT
CGTTTTCTGTAGTTCCTTCAGCATCAATTGAAAATTCCCCTTTCCACTTC
TCAAACTCCAATGCAGCTGCTTCCTCCTCC
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