CB293601

Overview
NameCB293601
Unique NameCB293601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293601_ssr50 microsatellite CB293601_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2568 contig Csv1_Contig2568:152..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293601 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.344e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -2
Query:  278 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 568
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CB293601 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = -2
Query:  281 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 568
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB293601 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.549e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = -2
Query:  281 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 568
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
BLAST of CB293601 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = -2
Query:  290 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG-TISRTGIMEKNDLRPAVREDS---GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 568
            MARS    K+L A VADG S + +R G+AAAA    + +R G     ++ P   E+    G   +W PDP+TGYYRPEN   EID A++R  +L  K
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKK 96          
The following BLAST results are available for this feature:
BLAST of CB293601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEA5_CITSI1.344e-48100.00Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.161e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.549e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
ARG2_PHAAU8.517e-1143.30Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06be04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293601 ID=CB293601; Name=CB293601; organism=Citrus sinensis; type=EST; length=704bp
TTTTTTTTTTTTTTTTTACAGTCTGGGATCCCAGACCCCATAACCCCTCT
ATATATATATAAAAGTAATTTTGCAATACCGGAATTCTTTACTTTTATTG
ACAAGTTAATAGACAAAATCATGGAAATGCACTATTAAAAGTTGTCAATA
ACAGTTGATATCAATACAACAGCAAAGACTTAAGAGTGAGTCAAAATTGC
TACTGTAACAACATCACTTAAAAAGTTAAAGCACCGCTAACAGCAAAGGA
TCTGCTGCTATGCGCCACCACTCCCTAGTGTGCCCTGACTTTGTGGTTCA
ACAGCATCTCTCGAAGCTCTGCTGGATCAATCTCGACCGCCCGATTCTCC
GGCCTGTAGTACCCAGTGATGGGATCTGGGGCCCAGGCAGAAGAGGCCCC
AGAATCCTCTCTCACCGCAGGCCTCAAATCATTTTTCTCCATGATACCAG
TCCGAGATATGGTCCCCAAGGGTGCTGCTGCAGCATATCCTCTCCTGCTA
ATGGAGAGCGAGATGCCATCAGCAACAGGAGCAAGAAGAAGCTTAGCTTT
GAAGAGAGAGCGGGCCATTGTTTTATTTACTTATAGAACTTAATAGATAT
GAAGATAGCTAGCTGGGATGTTTCTGTACAGTGCTACTACAGAAGAAGAA
AGATTCTGCTCCTGCAGTAGCTATAGGCAAAAGCTAGCGGCTCGCTCCCT
CGTG
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