CB293605

Overview
NameCB293605
Unique NameCB293605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293605 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.943e-36
Identity = 83/160 (51.88%), Postives = 106/160 (66.25%), Query Frame = -1
Query:  290 ERLALCGSGPIGDAEMACIFAKCVALKKLCIKGCGISDLGIEALAWGGPSLVKIKVKKCRGVSGEVSEWLKERRGSLVVNLDAE------VVDGLDASVSDGGIQESGLEFPMMAGQENGADASTKGFGRLAFFRGKLGLFAGRNLVPCAFRGWFNAESS 751
            ERLALCGSG IGDAE+ CI  KCV L+K CIKGC ISD+G++ALA G P LVK+KVKKC  V+GEV EWL+ERR +LVV++D +      +VDG D  V +  ++E   E P +   + G   +  G   LA  + KLGL AGRNLV C  R W  +E++
Sbjct:  363 ERLALCGSGTIGDAEIGCIAEKCVTLRKFCIKGCLISDVGVQALALGCPKLVKLKVKKCSLVTGEVREWLRERRMTLVVSMDDDETNGVGLVDGGDQRVLETVVEE---EAPPVIDGDGGLGVAGGGRLGLAILKTKLGLLAGRNLVACTLRRWSQSEAT 519          
BLAST of CB293605 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.843e-36
Identity = 88/166 (53.01%), Postives = 106/166 (63.86%), Query Frame = -1
Query:  290 ERLALCGSGPIGDAEMACIFAKCVALKKLCIKGCGISDLGIEALAWGGPSLVKIKVKKCRGVSGEVSEWLKERRGSLVVNLDAEVVDGLDASVSDGGIQESGLEFPMMA---------GQENGADASTKGFGRLAFFRGKLGLFAGRNLVPCAFRGWF---NAESS 751
            ERLALCGSG IGD E+ACI  KC AL+K CIKGC +SD GIEALA G P+LVK+KVKKC+ V+GE+ +WL+E+R +LVV++D    D  +A V   G  E+ +E P +A         G  NG      G  RLA  R KLG  AGRNLV C FR W    NA SS
Sbjct:  369 ERLALCGSGTIGDTEIACIARKCGALRKFCIKGCPVSDRGIEALAVGCPNLVKLKVKKCKVVTGEIGDWLREQRRTLVVSMDG---DETEAVVVVDGEVETVVEEPRVAQAGGIVAEIGSSNGG-----GGSRLAMIRSKLGFLAGRNLVTCTFRRWSHNDNASSS 526          
BLAST of CB293605 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.860e-33
Identity = 71/148 (47.97%), Postives = 96/148 (64.86%), Query Frame = -1
Query:  314 ERLALCGSGPIGDAEMACIFAKCVALKKLCIKGCGISDLGIEALAWGGPSLVKIKVKKCRGVSGEVSEWLKERRGSLVVNLDAEVVDGLDASVSD--GGIQESGLEFPMMAGQENGADASTKGFGRLAFFRGKLGLFAGRNLVPCAFR 751
            ERLALCG    GD E++CI AKC AL+KLCIK C ISD+GIE LA G P L K+K+KKC+GV G  ++WL+  R  L VN D    +  +A+ +D  GG QE+G+EFP +  Q   +  ++    R  +F+  +GLF+G +LVPC  R
Sbjct:  365 ERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENLANGCPGLTKVKIKKCKGVLGGCADWLRTVRPMLSVNADTMEQEHEEAASNDVVGGSQENGIEFPQLNSQIMASSIASSSRNRSGYFKSGIGLFSGMSLVPCTSR 512          
BLAST of CB293605 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.578e-32
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = -1
Query:  281 ERLALCGSGPIGDAEMACIFAKCVALKKLCIKGCGISDLGIEALAWGGPSLVKIKVKKCRGVSGEVSEWLKERRGSLVVNLDAEVVDGLDASVSDGGIQESGLEFPMMAGQENGADASTKGFGRLAFFRGKLGLFAGRNLVPCAFRGWFNAESSFNE 751
            ERLALCGS  +GD E+ CI  KC+AL+KLCIK C I+D GI+AL  G P+L+K+KVKKCRGV+ + ++ L++RR  LVVNLDA     ++ SV +GG QE+ +EFP    Q      ++    R + F+ +LG  + RN V CA R   +   S NE
Sbjct:  398 ERLALCGSDTVGDTELCCIAEKCLALRKLCIKNCPITDDGIKALGNGCPNLLKVKVKKCRGVTTQGADLLRKRRALLVVNLDAPETPIVEGSVGEGGAQENAVEFPPSRLQIPTIGLASGSTSRSSSFKLRLGFLSQRNFVSCALRRLGSRSRSRNE 554          
The following BLAST results are available for this feature:
BLAST of CB293605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FBL16_ARATH2.943e-3651.88F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
SKIP2_ARATH3.843e-3653.01F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FB37_ARATH8.860e-3347.97F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL8_ARATH2.578e-3247.13Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06be06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293605 ID=CB293605; Name=CB293605; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTCAAAAAAACAAATGGTCCCTTTAAATCCTTAAA
AATTTCCCAAAAAACAGCAAGCCCCCTTGACAATAATCTTTAACAATTCA
TTTTGGGGCAGCTATGCATTTAACAGCTTACAAAAATTTTAACAAATGAT
ACTATTTAAAAAAAAAAAGCCAAAACAACAAACTTAAAACATAAAACAAT
TCAATGTACCAAACCCCAGTCTTTGGGGGTCGGAACCACAAGAAATTTTT
TCAACTATGGGACATGATCAATCACAAATTTTCATTAAAACTGCTTTCAG
CATTAAACCATCCCCTAAATGCGCAAGGAACCAAATTCCTACCAGCAAAA
AGCCCCAACTTCCCCCGGAAAAACGCCAGTCTACCAAAACCTTTTGTCGA
AGCATCAGCACCATTTTCTTGGCCAGCCATCATCGGGAACTCCAAACCAC
TTTCTTGTATCCCACCATCACTAACACTCGCATCCAAACCATCAACCACT
TCAGCATCCAAGTTAACGACCAAGGACCCTCTACGTTCTTTCAACCACTC
AGAAACTTCACCACTCACTCCTCTACATTTCTTGACCTTGATTTTAACCA
AACTGGGACCCCCCCAAGCAAGAGCTTCAATTCCCAAATCGGAAATACCA
CATCCCTTAATACAAAGCTTCTTCAACGCAACGCATTTTGCAAAAATACA
AGCCATTTCGGCATCCCCAATTGGGCCACTCCCACAAAGTGCTAATCTTT
C
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