CB293606

Overview
NameCB293606
Unique NameCB293606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2627 contig Csv1_Contig2627:138..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293606 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.820e-66
Identity = 128/195 (65.64%), Postives = 155/195 (79.49%), Query Frame = 3
Query:  123 MGQTPSTAIDPSDR---FNILSPAIVYN-DGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAHSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKR 695
            MGQ PS+  + + R     + SP IV   + +   + +D  RDFTGDLPD+CLA++FQFLG+GDRKRCSLVCKRWL VDG SR+RLSL+A  EI S L S+F+RFDSVTKLALRCDRKS+SL D+AL +IS+RC  LTR+KLRGCREITD GM  FA+NCK LKKLS GSC FGAK +N++L+HCKLLEELS+KR
Sbjct:    1 MGQAPSSTAESNGRELDLRLWSPVIVAGGESMAVGNVVD--RDFTGDLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTRVKLRGCREITDLGMEDFAKNCKNLKKLSVGSCNFGAKGVNAMLEHCKLLEELSVKR 193          
BLAST of CB293606 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.704e-64
Identity = 123/194 (63.40%), Postives = 152/194 (78.35%), Query Frame = 3
Query:  123 MGQTPSTAIDPSDRFNIL---SPAIVYNDGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAHSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKR 695
            MGQ PS+  +P+ R   L   SP  +  + + F D      DFT +LPDDCLA+IFQFL +GDRKRCSLV KRWL VDG +R+RLSL+A SEIL  LP +F+RFDSVTKLALRCDR+S SL D+AL ++S+RC  L R+KLRGCREITD GM +FA+NCK+L+KLSCGSC FGAK IN++L+HCK+LEELS+KR
Sbjct:    1 MGQAPSSPAEPNVRDTSLCLWSPEFLDCESIGFEDG---DYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRHRLSLDAKSEILPFLPCIFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIRVKLRGCREITDLGMESFARNCKSLRKLSCGSCTFGAKGINAMLEHCKVLEELSLKR 191          
BLAST of CB293606 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.191e-59
Identity = 104/153 (67.97%), Postives = 131/153 (85.62%), Query Frame = 3
Query:  237 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAHSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKR 695
            D+T  LPD+CLA +FQFL SG+RKRC+LVC+RW+ V+G +RYRLSL+A S++++S+PS+FSRFDSVTKL+L+CDR+S+S+ D+ALV ISLRC+ L RLKLR CRE+TD GM AFA+NCK LK  SCGSC FGAK + +VLDHC  LEELSIKR
Sbjct:   38 DYTSSLPDECLALVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSCDFGAKGVKAVLDHCSNLEELSIKR 190          
BLAST of CB293606 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 90/157 (57.32%), Postives = 124/157 (78.98%), Query Frame = 3
Query:  225 DKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAHSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTRLKLRGCREITDHGMVAFAQNCKTLKKLSCGSCMFGAKAINSVLDHCKLLEELSIKR 695
            D+  D+  +LPD+CL+ IFQ L   D KRCSLVC+RWL ++G  R+RLSL A S+++S +PS+F+RFDSVTKL LR DR+S+ + D+A V+IS+RC+ LTRLKLRGC EI+D G++ F +NC++LKK+S GSC FG K +N++L+ C  LEELS+KR
Sbjct:   68 DEPYDYISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTIEGQCRHRLSLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTRLKLRGCPEISDLGIIGFTENCRSLKKVSFGSCGFGVKGMNALLNTCLGLEELSVKR 224          
The following BLAST results are available for this feature:
BLAST of CB293606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKIP2_ARATH1.820e-6665.64F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH1.704e-6463.40F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FB37_ARATH8.191e-5967.97F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL8_ARATH4.505e-4957.32Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06be06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293606 ID=CB293606; Name=CB293606; organism=Citrus sinensis; type=EST; length=696bp
GCACCAGGTCATTCATCATAATTATTTATTATAATTATAAACCTCTTTCT
CCAAGCACCCAAAAAAGAACGCACTAAGAGAAGATCCCTCTCGTTTTTGT
TGTGTGTTTATTTTGTTCGCCGATGGGCCAAACACCTTCAACGGCGATAG
ACCCGAGCGATCGGTTTAATATCTTATCTCCGGCGATCGTTTACAATGAT
GGTGTTGAGTTCTCCGACGAATTGGACAAGGCTCGGGATTTCACCGGCGA
TTTACCGGACGATTGTTTGGCATATATTTTTCAATTCCTCGGTTCTGGAG
ATCGGAAGCGATGTTCCCTTGTGTGCAAACGGTGGCTCCGCGTGGACGGC
GGGAGTCGCTATCGGCTATCTCTCAATGCTCATAGCGAGATATTATCGTC
TCTGCCTTCAGTTTTCTCGCGCTTCGACTCCGTCACGAAGCTAGCTCTGC
GATGCGACCGCAAATCGATTAGCTTAGACGACGACGCTTTGGTTTTGATC
TCTCTTCGTTGTCAGAAACTCACGCGCCTCAAGCTCCGTGGTTGCCGCGA
GATCACCGATCACGGTATGGTCGCATTTGCTCAAAATTGCAAAACTCTGA
AAAAACTTTCTTGCGGCTCGTGTATGTTTGGCGCCAAAGCTATCAATTCG
GTTCTTGATCACTGTAAGCTTCTCGAGGAGCTATCCATCAAGCGGC
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