CB293609

Overview
NameCB293609
Unique NameCB293609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig317 contig Csv1_Contig317:1..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293609 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.944e-27
Identity = 61/70 (87.14%), Postives = 68/70 (97.14%), Query Frame = -2
Query:  619 EIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 828
            EIVDARLMQAREIL+DLL PV+E+HDFYKKQQLRELA+LNG+LREEGSPMSGS+SP+ NSLGMKRAKTRG
Sbjct:  240 EIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGSISPY-NSLGMKRAKTRG 308          
BLAST of CB293609 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = -2
Query:  622 EIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKTR 828
            EIVDARLMQAREIL+DLL P++E+HD YKKQQLRELA+LNGTLREEGSPMSGSVSP+ NSLGMKRAKTR
Sbjct:  246 EIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPY-NSLGMKRAKTR 313          
BLAST of CB293609 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.160e-15
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = -2
Query:  625 EIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEGSPMSGSVSPFHNSLGMKRAKT 828
            +IVD +L QA+EI+E+L+KPVDES D+ K+QQLRELA+LN  LRE     SGSVSPF NS  MKR KT
Sbjct:  215 DIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPF-NSNAMKRPKT 281          
BLAST of CB293609 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = -2
Query:  625 IVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLN-GTLREE--GSPMSGSVSPFHNSLGMKRAKT 825
            IV+ RL QA+EI+E+LLKPVDES DF K+QQLRELA+LN   LREE  G    GSVSPF++S   KR KT
Sbjct:  217 IVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSS--GKRPKT 284          
BLAST of CB293609 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = -2
Query:  625 EIVDARLMQAREILEDLLKPVDESHDFYKKQQLRELAMLNGTLREEG-SP-MSGSVSPFHNSLGMKRAKT 828
            +I+++RL  A   LE LLKP+DES D YK++QL+ELA LNGTLREE  SP +S  +SP  +    KRAKT
Sbjct:  227 DIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNSKRAKT 296          
The following BLAST results are available for this feature:
BLAST of CB293609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
QKIL1_ARATH2.944e-2787.14KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL2_ARATH4.250e-2686.96KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKIL4_ARATH1.160e-1564.71KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH9.193e-1364.29KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL5_ARATH3.862e-1155.71KH domain-containing protein At1g09660 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06be08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06be08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293609 ID=CB293609; Name=CB293609; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTATCCCCATTTCGAATGCCGCAAAGGTCGAACTTATTTAA
TGAAAAACAAAATATGTAGTATGAATTAAAGAAAACAAATAACTTTATCG
TAGTCATAGACAGAATGGCAGAGATTGCCTTCTCAAAAAACCTAAATAAC
CATCTAAAACTAGTGCATAACCCTTCAACCAAAACCGCCGTTGCCTCCAC
CAACCCACACTTCACATTTAAGTATAAAAACCATACCCTTTACTCCCCCC
ATAAAAAACCCCGTCACTGTATCAAAACTGTTATTACAAGCTCATAATAT
ATAACCTACCAATACAAGAACGGCACTGGAGAGATAATGGTCTGACCAAT
TGCCTTAAGCAACAAATAAAATGCAACCCCGAGGACTCAAACCAACCATT
GCTTTACTACAAAATACCGTCATTAAACCTCCTCCAAGAAGAGGGAAAAC
ACACTTTCATATAGAAACAAGTTAGAACTAGCACACACTATAGTGCCAGT
GCCCCGATGGCAGTTGGAGGCATTTGTCCGACACAGCCACACCTGTGGTA
TGAAAACTGCCGCTTACTAGCAGATGCTAACAAACAAGCTCCAAAAGCCT
AATATTTTGGGTCCATTACCCTCTAGTCTTAGCTCTCTTCATACCAAGGC
TGTTATGGAAGGGGGACACTGAACCAGACATTGGAGAACCCTCTTCACGA
AGTGTACCATTGAGCATTGCAAGCTCTCGCAGTTGTTGTTTCTTGTAGAA
ATCATGGGATTCATCCACAGGCTTGAGCAAATCTTCAAGTATCTCACGTG
CTTGCATTAGGCGAGCATCAACTATCTCA
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