CB293700

Overview
NameCB293700
Unique NameCB293700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293700 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.117e-54
Identity = 122/225 (54.22%), Postives = 148/225 (65.78%), Query Frame = 1
Query:  148 LGNSSESVGLRHLLQFRNDDLNGSFRKVKP*EA---AKSDISKANIGAKDIYGPLAHTNLSITLGSPGINSNSFPSAVVDEKEHSKTSAIIHQGPKSRHXXXXXXXXXXXTGSEANAG--ISQIRVARPPAEGRGRNQLLPRYWPRITDQELQQLSGD----SNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFW 795
            +G+  E   L+HLL F+  D   S  ++K  E+   +  D  +     K++    A  NLSI+LG P + ++ F  A VD++  SKT++I    P+SR                  +G  +SQI VARPP EGRG+ QLLPRYWPRITDQEL QLSG     SNS I+PLFEKVLSASDAGRIGRLVLPKACAEAYFPPIS PEGLPL+IQD+KGKEWVFQFRFW
Sbjct:  122 VGSVLERTNLKHLLHFQRIDPTHSSLQMKQEESLLPSSLDALRHKTERKELS---AQPNLSISLG-PTLMTSPFHDAAVDDR--SKTNSIFQLAPRSRQLLPKPANSAPIAAGMEPSGSLVSQIHVARPPPEGRGKTQLLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISLPEGLPLKIQDIKGKEWVFQFRFW 340          
BLAST of CB293700 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.054e-50
Identity = 92/101 (91.09%), Postives = 95/101 (94.06%), Query Frame = 1
Query:  493 ISQIRVARPPAEGRGRNQLLPRYWPRITDQELQQLSGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFW 795
            +  +RVARPPAEGRGRNQLLPRYWPRITDQELQQ+SGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEG PL IQD KGKEW FQFRFW
Sbjct:  317 LPHLRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGRPLTIQDAKGKEWHFQFRFW 417          

HSP 2 Score: 25.0238 bits (53), Expect = 3.054e-50
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  779 FNSDFGPNNNTRMYV 823
            F   F PNNN+RMYV
Sbjct:  412 FQFRFWPNNNSRMYV 426          
BLAST of CB293700 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.308e-42
Identity = 76/100 (76.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:  496 SQIRVARPPAEGRGRNQLLPRYWPRITDQELQQLSGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFW 795
            +Q R+ RPP EGRGR  LLPRYWP+ TD+E+QQ+SG+ N  IVPLFEK LSASDAGRIGRLVLPKACAEAYFPPISQ EG+PL+IQDV+G+EW FQFR+W
Sbjct:  250 AQARIGRPPVEGRGRGHLLPRYWPKYTDKEVQQISGNLNLNIVPLFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKIQDVRGREWTFQFRYW 349          
BLAST of CB293700 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 7.880e-41
Identity = 78/100 (78.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query:  496 SQIRVARPPAEGRGRNQLLPRYWPRITDQELQQLSGDSNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFW 795
            +Q+R  RP  + + R+QLLPRYWPRITDQELQ LSGDSNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP ISQ EGLPL++QD  GKEWVFQFRFW
Sbjct:  408 AQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFW 507          
BLAST of CB293700 vs. ExPASy Swiss-Prot
Match: VAL3_ARATH (B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.146e-15
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  526 EGRGRNQLLPRYWPRIT--DQELQQLSGDSNSTIVPLFE----KVLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFW 795
            E  G+ Q++PR+WP+++  +Q LQ  S +  S+++        K+LSA+D G+  RLVLPK  AEA+ P +S  +G+PL +QD  GKEW FQFRFW
Sbjct:  262 ETPGKYQVVPRFWPKVSYKNQVLQNQSKEYPSSLIDTTLEYNFKILSATDTGK--RLVLPKKYAEAFLPQLSHTKGVPLTVQDPMGKEWRFQFRFW 355          
The following BLAST results are available for this feature:
BLAST of CB293700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VAL2_ARATH8.117e-5454.22B3 domain-containing transcription repressor VAL2 ... [more]
Y7797_ORYSJ3.054e-5091.09B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
VAL1_ARATH9.308e-4276.00B3 domain-containing transcription repressor VAL1 ... [more]
Y7633_ORYSJ7.880e-4178.00B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
VAL3_ARATH1.146e-1545.83B3 domain-containing transcription factor VAL3 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293700 ID=CB293700; Name=CB293700; organism=Citrus sinensis; type=EST; length=824bp
GCCCTTGGAATCCAGGACTTGACTCAATTCCTGGTGATGATCCCAATGGA
TTTGGCACTCTAAAAACTGATAATGCTGGCGACTTGCCATCAACCTCTGT
GGACAATCAATTGCCGAGGTAGTGACGACAAATTTAAGCTTTTGCAGTTA
GGAAATAGTTCAGAGAGTGTGGGGCTGAGGCACTTGCTTCAATTTCGGAA
TGATGACCTAAATGGGTCTTTCAGGAAAGTGAAACCATAGGAAGCTGCGA
AGTCAGATATTTCTAAGGCAAATATTGGAGCAAAAGATATCTATGGACCA
TTGGCACATACAAACTTAAGCATTACCCTGGGTTCTCCTGGAATAAACTC
GAATTCTTTTCCCAGTGCTGTTGTTGATGAAAAAGAACACAGTAAGACAT
CCGCCATCATCCATCAAGGACCCAAGTCTCGCCATCTTTTGCCTAAGCCT
CCAAAGTTAGCCCTTGCCACAGGTTCCGAGGCAAATGCAGGCATATCCCA
AATTCGTGTTGCTAGGCCACCTGCTGAAGGAAGGGGCCGAAACCAGTTGC
TTCCTCGCTATTGGCCCAGAATTACGGACCAAGAATTACAGCAATTATCT
GGAGATTCAAATTCCACCATTGTTCCATTGTTTGAAAAAGTTTTGAGTGC
CAGTGATGCTGGTCGCATTGGTCGATTGGTTCTCCCTAAAGCATGTGCTG
AAGCATATTTTCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTGAGGATT
CAAGATGTAAAGGGAAAAGAATGGGTGTTTCAATTCAGATTTTGGGCCTA
ATAATAACACCAGGATGTATGTTT
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