CB293705

Overview
NameCB293705
Unique NameCB293705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293705_ssr436 microsatellite CB293705_ssr436:436..445. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3249 contig Csv1_Contig3249:44..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.386e-31
Identity = 51/87 (58.62%), Postives = 53/87 (60.92%), Query Frame = -3
Query:  145 MASVPGTSPCMTSLSCSLKQTQGRXXXXXXXXXXXNGKSFPSLRMRSAPRFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 405
            MASV GTS  M S   SL  +  R            GKSF  LRMRSA RF V CAAKPE V+KVC IVKKQLALP D  V GESKF
Sbjct:    1 MASVTGTSISMASFKASLAPS--RVSNLRSVSLPIKGKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKF 84          

HSP 2 Score: 76.2554 bits (186), Expect = 2.386e-31
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            A LGADSLDT EIVMGLEE+FGI+VEEESAQSI+T QDAAD +EKLI
Sbjct:   85 ATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLI 131          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.971e-28
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            +ALGADSLDT EIVMGLEE+FGISVEEESAQSI T QDAAD +EKL+
Sbjct:   88 SALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLM 134          

HSP 2 Score: 70.4774 bits (171), Expect = 2.971e-28
Identity = 43/86 (50.00%), Postives = 48/86 (55.81%), Query Frame = -3
Query:  145 ASVPGTSPCMTSLSCSLKQTQGRXXXXXXXXXXXNGKSFPSLRMRSAPRFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 402
            ++  G S C+ S SCS     GR           + KSFPSLR       RVSC AKPE V KVC+IVKKQLALP D  V G SKF
Sbjct:    3 SAAAGASICIKSASCS-PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKF 87          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.036e-27
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            +ALGADSLDT EIVMGLEE+FGISVEEESAQSI T QDAAD +EKL+
Sbjct:   93 SALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLV 139          

HSP 2 Score: 65.0846 bits (157), Expect = 7.036e-27
Identity = 40/81 (49.38%), Postives = 45/81 (55.56%), Query Frame = -3
Query:  145 CMTSLSCSLKQTQ--GRXXXXXXXXXXXNGKSFPSLRMRSAP-RFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 378
            C+ S SCSL + Q               +GK FPSLR    P  FRV C AK E V +VC+IVKKQLALP D  V G SKF
Sbjct:   12 CIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKF 92          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.811e-26
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            +ALGADSLDT EIVMGLEE+FGISVEEESAQSI T QDAAD +EKL+
Sbjct:   89 SALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLM 135          

HSP 2 Score: 62.7734 bits (151), Expect = 5.811e-26
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = -3
Query:  145 ASVPGTSPCMTSLSCSLKQTQGRXXXXXXXXXXXNGKSFPSLRM-RSAPRFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 402
            ++  G S C+ S S S     GR           + KSFPSL+  +S+   RVSC AKPE V KVC IVKKQLALP D  V G SKF
Sbjct:    3 SAAAGASICIKSASFS-PLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKF 88          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.284e-25
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            +ALGADSLDT EIVMGLEE+FGISVEEESAQSI T QDAAD +EKL+
Sbjct:   86 SALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLM 132          

HSP 2 Score: 61.6178 bits (148), Expect = 1.284e-25
Identity = 40/86 (46.51%), Postives = 47/86 (54.65%), Query Frame = -3
Query:  145 ASVPGTSPCMTSLSCSLKQTQGRXXXXXXXXXXXNGKSFPSLRMRSAPRFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 402
            ++ P +S C+ S SCS     GR           + KSF S   R +   RV+C AKPE V KVC IVKKQLALP D  V G SKF
Sbjct:    3 SAAPASSICIKSASCSAL-APGRISSLRSVSLPVSRKSFFS--RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKF 85          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 3.281e-19
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = -1
Query:    3 SQNSAALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 155
            S   A LGADSLDT EIVMGLEE FGISVEE SAQ+I+T +DAA+ ++ L+
Sbjct:   77 SSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          

HSP 2 Score: 49.6766 bits (117), Expect = 3.281e-19
Identity = 27/47 (57.45%), Postives = 30/47 (63.83%), Query Frame = -3
Query:  145 SLRMRSAP-RFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 282
            S R++  P RF V CAAK E V+KVC IVK QLAL  D  V G S F
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTF 80          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.245e-19
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = -1
Query:    3 PFPESQNSAALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 167
            P       + LGADSLDT EIVMGLEE+F I+V+E SAQ I+T QDAA+ +EKL+
Sbjct:   90 PVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLV 144          

HSP 2 Score: 48.9062 bits (115), Expect = 9.245e-19
Identity = 30/56 (53.57%), Postives = 35/56 (62.50%), Query Frame = -3
Query:  145 SFPSLRMR-SAPRFRVSCAA------KPEPVDKVCQIVKKQLALPADPTVPGESKF 291
            SF S+  R S+ RF++ CAA      K E VDKVC IVKKQLA+P    V  ESKF
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKF 97          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 2.059e-18
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = -1
Query:    3 LGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 137
            LGADSLDT EIVMGLEE+F ISVEE SAQ+I+T +DAA  ++KL+
Sbjct:   83 LGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLV 127          

HSP 2 Score: 49.6766 bits (117), Expect = 2.059e-18
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = -3
Query:  145 LRMRSAP-RFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 279
            LR++  P RF V C+AK + V+KVC+IVKKQLA+P    V G +KF
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKF 80          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 7.619e-18
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            AALGADSLDT EIVMGLEE+FGI + EE AQSI+T + AA  +E+L+
Sbjct:   85 AALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELL 131          

HSP 2 Score: 48.1358 bits (113), Expect = 7.619e-18
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = -3
Query:  145 KSFPSLRMRSAP-RFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 294
            +S  S  +R  P R  VSCAAKPE VDKVC +V+KQL+L     +   +KF
Sbjct:   34 RSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKF 84          
BLAST of CB293705 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.292e-17
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = -1
Query:    3 AALGADSLDTAEIVMGLEEQFGISVEEESAQSISTFQDAADPMEKLI 143
            A LGADSLDT EIVMGLEE+F I + EE AQ I+T ++AA+ +E+L+
Sbjct:   84 ADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELV 130          

HSP 2 Score: 51.2174 bits (121), Expect = 1.292e-17
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = -3
Query:  145 SLRMRSAPRFRVSCAAKPEPVDKVCQIVKKQLALPADPTVPGESKF 282
            +LR     RF +SCAAKPE V+KV +IVKKQL+L  D  V  E+KF
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKF 83          
The following BLAST results are available for this feature:
BLAST of CB293705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_CASGL2.386e-3158.62Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA2.971e-2882.98Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA7.036e-2782.98Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA5.811e-2682.98Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA1.284e-2582.98Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP2_HORVU3.281e-1966.67Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP1_HORVU9.245e-1960.00Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU2.059e-1871.11Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP2_ARATH7.619e-1868.09Acyl carrier protein 2, chloroplastic OS=Arabidops... [more]
ACP_BRACM1.292e-1761.70Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293705 ID=CB293705; Name=CB293705; organism=Citrus sinensis; type=EST; length=515bp
TCAATGAGCTTCTCCATCGGATCGGCAGCATCTTGAAAGGTTGAGATGGA
CTGGGCACTTTCTTCTTCAACGCTGATCCCAAATTGCTCCTCCAGTCCCA
TCACAATCTCAGCCGTATCAAGAGAATCAGCTCCAAGGGCAGCGGAATTT
TGACTCTCCGGGAACGGTAGGATCTGCTGGGAGTGCCAACTGCTTCTTCA
CTATTTGACAAACCTTATCCACGGGCTCTGGCTTGGCCGCACAGGAAACC
CGGAAGCGGGGTGCTGATCGCATTCTAAGGGATGGGAAGCTTTTCCCATT
GATGGAAAGTGAAACTGAATTCACACTAGAGATCCTACCCTGGGTCTGCT
TGAGAGAGCAAGACAGAGAGGTCATGCAGGGTGAAGTTCCTGGAACTGAA
GCCATTGAATAGAGATCTGAGATTTGAAGTTGAAAAGAGAGAGAGCGAGA
GAGAGGACGACGAATAGCACGAAGACTGCGTGCTATGTAATGTGTGTCTG
AGACTGAGCCTCGTG
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