CB293710

Overview
NameCB293710
Unique NameCB293710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13850 contig Csv1_Contig13850:39..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293710 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   76 AMVDDRRSRLNPNAPIFIPNAAFGEVEDFSPEWWDLVKTSPLFRDYWLSQHQE 234
            A +D R S LNPNAP+F P   F EVEDFSP+WWDLV TS  FRD+WLS + E
Sbjct:    3 ATIDRRLSTLNPNAPVFDP-VEFREVEDFSPKWWDLVTTSKWFRDFWLSANSE 54          
The following BLAST results are available for this feature:
BLAST of CB293710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH2.202e-1264.15Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293710 ID=CB293710; Name=CB293710; organism=Citrus sinensis; type=EST; length=738bp
GCACTAGGGCACGGTGGACTGTTCGTGACTGAACTGAACAGAAGAATCAA
CGACCACGAGTTTTGAGAAGCGATGGCGATGGTGGATGATCGAAGGTCAC
GATTGAATCCGAATGCGCCGATATTTATACCGAACGCTGCGTTTGGTGAA
GTGGAGGATTTTTCGCCGGAATGGTGGGACCTTGTGAAGACTTCGCCGCT
GTTCCGTGATTACTGGCTGAGTCAGCATCAAGAAGATGATTTTACCAGCA
GTTTCGACGACTACGATTACTCGGATTTGGATGAGTTTCCTGATATTGTC
GGCGCTGATCTGTCTGTAGAATCTAAAGAAAAAAATTTATCAGATTTCTA
GAAAGGAAGAGTGCTTCTCGATGGCACTGGGAATGGAGTGGATGCAAAGG
CTTTGTTAAAGAACTTGAATTTATCAAAACCTTTGAAGGAGCGAGGGCCG
AAGTCTCCAGTGGGATCTGCCAAGTATTGTGGGAAGAAGCTGGCTAATAA
GTGTGTGATGGGCCCAAAAGTCACCCCCATACGGCGCATTCATCAGCCTC
GGTGAAGGAAATTTCAGACTGATGCGTTTTTATTGTAATATTGACCTTCT
AGCTAGTTGCATGTCTACAAACAAGTTTTGTATCTGCATTTGTGTTGTAT
TGTTCATTTTCATCTCTTTCCCTGTATAGTTTTAACCGAGTTCAGTGAAA
CCTTTGTAAATGCTTTAATCTATGGAATAAAGGATGTG
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