CB293713

Overview
NameCB293713
Unique NameCB293713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig999 contig Csv1_Contig999:1..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.673e-96
Identity = 167/187 (89.30%), Postives = 179/187 (95.72%), Query Frame = 1
Query:  247 RAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            R FSS S++P ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   44 RGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 230          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.727e-96
Identity = 169/196 (86.22%), Postives = 181/196 (92.35%), Query Frame = 1
Query:  220 LGPQFQLPCRAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            L  QF    R FSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTEEDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 240          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 8.302e-96
Identity = 168/196 (85.71%), Postives = 181/196 (92.35%), Query Frame = 1
Query:  220 LGPQFQLPCRAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            L  QF    R FSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT+EDI LANSVDLGSLRDPQQDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 240          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 4.120e-95
Identity = 165/187 (88.24%), Postives = 178/187 (95.19%), Query Frame = 1
Query:  247 RAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            R FSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   58 RGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 244          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.199e-94
Identity = 165/187 (88.24%), Postives = 178/187 (95.19%), Query Frame = 1
Query:  247 RAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            R FSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYAS +RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRT++DIKLANSVDLG+LRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   51 RGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 237          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.566e-94
Identity = 164/185 (88.65%), Postives = 177/185 (95.68%), Query Frame = 1
Query:  253 FSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            FSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLILKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DI LANSVDLGSLRDPQQDAERVK+PEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   24 FSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 208          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 6.578e-93
Identity = 161/193 (83.42%), Postives = 180/193 (93.26%), Query Frame = 1
Query:  232 FQLPCRAFSS-ESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            F +  R FSS E++ PRN+++ +  +PATVAAVKNP  K+VYDEYNHERYPPGDPSKRAFAYFVL+GGRF+YASL+RLL+LKFVLSMSASKDVLA+ASLEVDLSSIEPG+TVTVKWRGKPVFIRRRTE+DIKLANSVD+ SLR P+QDAERVKNPEWLVV+GVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS
Sbjct:   53 FFVASRGFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 245          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.647e-44
Identity = 77/136 (56.62%), Postives = 108/136 (79.41%), Query Frame = 1
Query:  400 RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            R++AYF++     + ++  +  +  F+ SM+A+ DVLAMA +EV+L++I  G  V VKW+GKPVFIR RT  +I+ ANSVD+ +L+DPQ DA+RVK+P+WL+++G+CTHLGC+P+  AGDFGGWFCPCHGSHYDIS
Sbjct:   53 RSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIGEAGDFGGWFCPCHGSHYDIS 188          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.375e-44
Identity = 80/134 (59.70%), Postives = 105/134 (78.36%), Query Frame = 1
Query:  406 FAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            F+YF++     + A+  +  I +F+ +MSAS DVLAMA +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V++ +LRDP+ DA+RVK PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDIS
Sbjct:   70 FSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDIS 203          
BLAST of CB293713 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 8.154e-43
Identity = 82/141 (58.16%), Postives = 105/141 (74.47%), Query Frame = 1
Query:  385 GDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDIS 807
            GD S R  +Y ++     + A+  +  +  F+ S SAS DVLAM+  EVDLS I  G  + VKW+GKPVFIR RT E+I+ ANSVD+ +LRDPQ D++RV+ PEWLV++GVCTHLGC+P+  AGD+GGWFCPCHGSHYDIS
Sbjct:   62 GDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVPIGEAGDYGGWFCPCHGSHYDIS 201          
The following BLAST results are available for this feature:
BLAST of CB293713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI1_TOBAC1.673e-9689.30Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI3_TOBAC3.727e-9686.22Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI5_TOBAC8.302e-9685.71Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI2_TOBAC4.120e-9588.24Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI_SOLTU1.199e-9488.24Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI4_TOBAC1.566e-9488.65Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_MAIZE6.578e-9383.42Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST5.647e-4456.62Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR7.375e-4459.70Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO8.154e-4358.16Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cb12_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cb12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293713 ID=CB293713; Name=CB293713; organism=Citrus sinensis; type=EST; length=807bp
GCCCGTGGGAGAGACCGATAACACCAATCGCCATTTCGAACACATAATCA
GAGAGAGATTTTGAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCAC
CATCCTCATCATCCTCATTGAGGCCCATGGCATCGTCTCGGAATATAATT
AACGGCGCCGGTTCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGG
CTTCTATGGCTCCGGATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAG
CTTTTTCTTCTGAGTCACTGACACCAAGAAATGAAGAAAGCCTGGTTCCA
GGTGTTCCAGCAACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGT
ATATGATGAGTACAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGC
GGGCATTTGCCTACTTTGTCCTGACTGGTGGTAGGTTTGTGTACGCTTCA
CTCATCCGTCTACTTATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAA
GGATGTTCTTGCTATGGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGC
CAGGCAGCACAGTGACTGTTAAGTGGCGAGGCAAGCCAGTTTTCATCAGA
CGTCGGACTGAGGAAGATATCAAGCTGGCCAACAGTGTTGATTTGGGATC
TCTTCGTGATCCTCAGCAAGACGCTGAGAGGGTTAAAAACCCAGAGTGGC
TTGTAGTTGTTGGGGTCTGCACACATCTTGGTTGCATTCCTTTGCCAAAT
GCTGGTGATTTTGGTGGATGGTTTTGCCCTTGCCATGGTTCTCATTACGA
TATCTCT
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