CB293714 | Citrus Genome Database

Overview


Name	CB293714
Unique Name	CB293714
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	186

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6849	contig	Csv1_Contig6849:559..744.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.609e-13
Identity = 39/60 (65.00%), Postives = 42/60 (70.00%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+G ILQISGERS E EEK+  WHRVE           LP+N KVE VKASMENGVLSV
Sbjct:   78 VEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSV 137

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.609e-13
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+G ILQISGERS E EEKN  WHRVE           LP+N K+E +KASMENGVLSV
Sbjct:   79 VEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSV 138

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.341e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +E+ R+LQISGER++E+E+KN  WHRVE           LP+N KVE VKASMENGVL+V
Sbjct:   75 IEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTV 134

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.341e-12
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +++GR+LQISGER++E+E+KN  WHRVE           LP+N KV+ VKASMENGVL+V
Sbjct:   75 IQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTV 134

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.987e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEE R+LQISGER++E+E+KN  WHRVE           LP+N K++ VKASMENGVL+V
Sbjct:   76 VEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTV 135

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.987e-12
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            V++G ILQISGER+ EQEEK   WHRVE           LPDN K E +KASMENGVL+V
Sbjct:   83 VDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTV 142

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.901e-12
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            +E+ ++LQISGER++E+E+KN  WHRVE           LP+N KVE VKASMENGVL+V
Sbjct:   83 IEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTV 142

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.901e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VEEG++LQISGER+ E+EEKN  WHRVE           LP+N  V+ VKA MENGVL+V
Sbjct:   81 VEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTV 140

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.901e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+ R+LQISGERS+E+E+KN  WHRVE           LP+N K++ VKASMENGVL+V
Sbjct:   80 VEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTV 139

[Close]

BLAST of CB293714 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.095e-12
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = -3

Query:    5 VEEGRILQISGERSMEQEEKNVMWHRVEXXXXXXXXXXXLPDNGKVEPVKASMENGVLSV 184
            VE+G +LQISGERS EQEEK   WHRVE           LP+N K E +KASMENGVL+V
Sbjct:   83 VEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTV 142

The following BLAST results are available for this feature:

BLAST of CB293714 vs. ExPASy Swiss-Prot

BLAST of CB293714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
HSP17_ARATH	4.609e-13	65.00	17.4 kDa class I heat shock protein OS=Arabidopsis...	[more]
HS17C_ARATH	4.609e-13	63.33	17.6 kDa class I heat shock protein 3 OS=Arabidops...	[more]
HSP13_SOYBN	1.341e-12	58.33	17.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP11_SOYBN	1.341e-12	56.67	17.3 kDa class I heat shock protein OS=Glycine max...	[more]
HSP12_SOLPE	2.987e-12	58.33	17.6 kDa class I heat shock protein OS=Solanum per...	[more]
HS17A_ORYSJ	2.987e-12	60.00	17.9 kDa class I heat shock protein OS=Oryza sativ...	[more]
HSP16_SOYBN	3.901e-12	56.67	18.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP12_DAUCA	3.901e-12	58.33	18.0 kDa class I heat shock protein OS=Daucus caro...	[more]
HSP11_PEA	3.901e-12	58.33	18.1 kDa class I heat shock protein OS=Pisum sativ...	[more]
HS181_ORYSJ	5.095e-12	60.00	18.1 kDa class I heat shock protein OS=Oryza sativ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS01_06cc01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB293714 ID=CB293714; Name=CB293714; organism=Citrus sinensis; type=EST; length=186bp
CAGGCACTGAGAGCACACCATTCTCCATGCTGGCCTTAACCGGCTCCACC
TTACCATTGTCCGGCAACCTGAACCTCCTCAAGAACTAGCCACTGCTCCT
CTCGACGCGATGCCACATGACATTCTTCTCTTCCTGCTCCATGCTCCGCT
CCCCGCTTATCTGCAGAATCCTGCCCTCTTCGACCT