CB293716

Overview
NameCB293716
Unique NameCB293716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:487..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293716 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = -1
Query:  180 NNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFVLCVAGNDLIKAPEMEYYEAMKKAGKDVELLVNPGMGHSFYL 641
            ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  ++ VAG DLI+  +++Y E +KKAG++V+LL        FYL
Sbjct:  170 SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CB293716 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = -1
Query:  180 NWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFVLCVAGNDLIKAPEMEYYEAMKKAGKDVELLVNPGMGHSFYL 638
            +WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  ++ VAG DLI+  ++ Y E +KKAG++V+L+        FYL
Sbjct:  173 SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CB293716 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 53/149 (35.57%), Postives = 77/149 (51.68%), Query Frame = -1
Query:  213 NWLTEHVDFQR-------VFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFVLCVAGNDLIKAPEMEYYEAMKKAGKDVELL 638
            NW+   V  Q        V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  ++ VAG DL++  ++ Y + +KK G +V LL
Sbjct:  167 NWVKSRVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CB293716 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 49/143 (34.27%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  180 RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFVLCVAGNDLIKAPEMEYYEAMKKAGKDVELLVNPGMGHSFYL 608
            RVFL GDSSGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     ++ V+G DL    ++ Y +A+++ G  V+++        FYL
Sbjct:  191 RVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
The following BLAST results are available for this feature:
BLAST of CB293716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH5.495e-2038.71Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH5.143e-1835.71Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH4.354e-1735.57Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ7.686e-1434.27Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc02_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293716 ID=CB293716; Name=CB293716; organism=Citrus sinensis; type=EST; length=680bp
GGCGGTAAGTTACAACCAATGTGACTTAAGAAAAACCCCCCCCTTAATCG
GATAATCAACTATTTATGGATTAAAAAATTGATAATTGATCCGTGCTTCC
TCATAAACTCCGCTATTCCTTGAAAAAGACTACAAGTTTGAGCAGCAGTG
TTTGGGTCCATATCGACTGCAATCTTGTCGAGATAAAAACTGTGACCCAT
TCCAGGATTCACCAACAACTCCACATCCTTTCCAGCCTTTTTCATGGCTT
CATAATATTCCATCTCAGGGGCCTTAATCAAGTCATTACCCGCCACGCAC
AGCACAAACGGAGGCAGCTTCAGACCGTCGATCGGGGACGCAGCCGGCCC
CATTGGACAGGTGTACGGATGCCCCTTGTCGCTGTTCAACGGGAGGGCAA
AGCTCAAGAACTTGTCCACCATGTCCAGAGTCAGAAGAGGTGACTGCGGG
TTTTCCAACTCCGACTTGCTCCTTTCCTGCCGGAGGAAACCCGGATGAAT
CGGAATCGCTCCGGCCACACGCAACGGGCTCAAGTCCGCGTCACCTGCAC
GTGCCGCCACTTCATGCACTACGTTCCCTCCGGAGCTGTCTCCAATGAGG
AAGACGCGTTGAAAATCCACATGTTCAGTCAGCCAATTATTCTCCCGAGC
CTGAGCCTGAACCAGTGATAGTGACCGGAG
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