CB293717

Overview
NameCB293717
Unique NameCB293717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:18..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.565e-24
Identity = 72/195 (36.92%), Postives = 111/195 (56.92%), Query Frame = 2
Query:  122 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVVGAIPIHPGFLRQERSKSE 691
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V+G I ++P F   ER++SE
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESE 228          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 70/197 (35.53%), Postives = 104/197 (52.79%), Query Frame = 2
Query:  122 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVVGAIPIHPGFLRQERSKSE 691
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG+   S + V+G I ++P F   ER++SE
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESE 230          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.095e-22
Identity = 73/211 (34.60%), Postives = 106/211 (50.24%), Query Frame = 2
Query:   80 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVVGAIPIHPGFLRQERSKSE 691
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V+G I +HP F  QER++SE
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSE 230          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.913e-21
Identity = 70/207 (33.82%), Postives = 99/207 (47.83%), Query Frame = 2
Query:  122 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVVGAIPIHPGFLRQERSKSE 691
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D     ++V G I ++  F   ER++SE
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESE 237          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.490e-11
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 2
Query:  119 VKFLS--EPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAAR-AGDADLSPLRVVGAIPIHPGFLRQERS-KSELENPQSPLLT 721
            VKFL+  + VPP SD  ++V   + T N    + VR+Y P+          K+K     + + HGGG+CV  A    Y  +  + A  +  + VS   R APE+  P  F+D ++AL W     + +            VD +RV + GDS+GGN+   VA +   D D+  +++     I+P     +    S  EN Q P+L+
Sbjct:   61 VKFLTSFQEVPPTSD--ENVTVTETTFNN---VPVRVYVPKR---------KSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYG---------VDPERVGVSGDSAGGNLAAAVAQQLIKDPDVK-IKLKTQSLIYPALQTLDMDLPSYRENAQFPILS 241          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: AAAD_RAT (Arylacetamide deacetylase OS=Rattus norvegicus GN=Aadac PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 59/205 (28.78%), Postives = 95/205 (46.34%), Query Frame = 2
Query:  140 VPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAAR-AGDADLSPLRVVGAIPIHPGFLRQERS-KSELENPQSPLLTLDMVDKFLS 748
            VPP SD  ++V   +   N    + VRIY P+          K+      +   HGGG+C+  A ++MY  +  + A  + A+ VS     AP++  P  F+D + +L W     + +            VD +RV + GDS+GGN+   V  +   D D+     V A+ I+P     + +  S+ EN Q PLLT  ++ +F S
Sbjct:   70 VPPTSD--ENVTVMETDFNS---VPVRIYIPKR---------KSTTLRRGLFFIHGGGWCLGSAAYFMYDTLSRRTAHRLDAVVVSTDYGLAPKYHFPKQFEDVYHSLRWFLQEDILEKYG---------VDPRRVGVSGDSAGGNLTAAVTQQILQDPDVKIKLKVQAL-IYPALQALDMNVPSQQENSQYPLLTRSLLIRFWS 250          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: AAAD_BOVIN (Arylacetamide deacetylase OS=Bos taurus GN=AADAC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-11
Identity = 55/203 (27.09%), Postives = 91/203 (44.83%), Query Frame = 2
Query:  143 PPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVVGAIPIHPGFLRQERS-KSELENPQSPLLTLDMVDKFLS 748
            PP SD  +++   D T N    + VRIY P++         K K     + + HGGG+C    D+Y Y  +    A+ + A+ +S   R AP++  P  F+D + AL W              N  +  VD  R+ + GDS+GGN+   VA +  +     +++     I+P     +    S  EN   P+L+  ++ +F S
Sbjct:   72 PPTSD--ENIIVKDTTFND---IPVRIYVPQQ---------KTKSLRRGLFYIHGGGWCFGSNDYYSYDLLSRWTAERLDAVVISTNYRLAPKYHFPVQFEDVYTALKWFLD---------PQNLESYGVDPGRIGISGDSAGGNLAAAVAQQLLEDPDVKIKLKVQTLIYPALQNFDFDLPSYRENAHYPVLSKSLMVRFWS 251          
BLAST of CB293717 vs. ExPASy Swiss-Prot
Match: ADCL2_HUMAN (Arylacetamide deacetylase-like 2 OS=Homo sapiens GN=AADACL2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 53/203 (26.11%), Postives = 96/203 (47.29%), Query Frame = 2
Query:  155 DFIDSVATHDVTINKES--GLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEH-VDFQRVFLIGDSSGGNVVHEVAARA-GDADLSPLRVVGAIPIHPGF-LRQERSKSELENPQSPLLTLDMVDKFLS 748
            D+   ++   +T+   +   + VR+Y P+          K++ +   +++FHGGGFC   +    +  +    A ++ A+ V V  R AP+H  PA F+DG  A+ +     +          LT++ VD  R+ + GDSSGGN+   V  +   DA++   ++   + ++PG  +      S  EN    +LT D+  K +S
Sbjct:   69 DYTQPLSDEYITVTDTTFVDIPVRLYLPKR---------KSETRRRAVIYFHGGGFCFGSSKQRAFDFLNRWTANTLDAVVVGVDYRLAPQHHFPAQFEDGLAAVKFFLLEKI----------LTKYGVDPTRICIAGDSSGGNLATAVTQQVQNDAEIKH-KIKMQVLLYPGLQITDSYLPSHRENEHGIVLTRDVAIKLVS 251          
The following BLAST results are available for this feature:
BLAST of CB293717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GI1L3_ARATH2.565e-2436.92Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH2.401e-2235.53Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH4.095e-2234.60Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ5.913e-2133.82Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT2.490e-1129.76Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
AAAD_RAT3.252e-1128.78Arylacetamide deacetylase OS=Rattus norvegicus GN=... [more]
AAAD_BOVIN3.252e-1127.09Arylacetamide deacetylase OS=Bos taurus GN=AADAC P... [more]
ADCL2_HUMAN4.247e-1126.11Arylacetamide deacetylase-like 2 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293717 ID=CB293717; Name=CB293717; organism=Citrus sinensis; type=EST; length=749bp
GCCCTTTGACTAGGTAGCTATGGTGAACGATGGAAGAGCAATAGTGGATG
AAGTGTCCGGTTGGCTAAGAGTCTACAGCGACGGTTCAGTTGATCGAACA
TGGACCGGACCACCGGAGGTCAAGTTCTTGTCCGAACCGGTGCCACCCCA
CAGTGACTTTATTGACAGTGTCGCCACCCACGACGTAACCATCAACAAAG
AATCCGGCCTCCGTGTCCGAATTTATTCACCGGAGGAGATCAAGAAACTT
AATGGTGATGATTGCAAGAACAAGAAGAAGCTACCAATCATCCTTCACTT
TCATGGGGGTGGTTTTTGCGTTAGCCAAGCTGATTGGTACATGTACTATC
ACGTTTACACGAAGCTTGCAAAATCTGTCCCGGCTATCTGTGTCTCCGTC
TATCTCCGGCGGGCCCCGGAGCACCGCCTCCCGGCCGCTTTCGACGATGG
TTTCGAAGCCCTCCTTTGGCTCCGGTCACTATCACTGGCTCAGGCTCAGG
CTCGGGAGAATAATTGGCTGACTGAACATGTGGATTTTCAACGCGTCTTC
CTCATTGGAGACAGCTCCGGAGGGAACGTAGTGCATGAAGTGGCGGCACG
TGCAGGTGACGCGGACTTGAGCCCGTTGCGTGTGGTCGGAGCGATTCCGA
TTCATCCGGGTTTCCTCCGGCAGGAAAGGAGCAAGTCGGAGTTGGAAAAC
CCGCAGTCACCTCTTCTGACTCTGGACATGGTGGACAAGTTCTTGAGCT
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