CB293718 | Citrus Genome Database

Overview


Name	CB293718
Unique Name	CB293718
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	263

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9540	contig	Csv1_Contig9540:664..924.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.133e-33
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.133e-33
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.133e-33
Identity = 68/73 (93.15%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.049e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADH+ DPV+NNAWAFATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.049e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADH+ DPV+NNAWAFATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.206e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.206e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.206e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLA+DPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWAFATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.206e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of CB293718 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.206e-33
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = -2

Query:   38 SCDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGLFVQAIVTGKGPLEKLADHLDDPVHNNAWAFATNFVPGK 256
            S DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFG FVQAIVTGKGPLE LADHL DPV+NNAWA+ATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of CB293718 vs. ExPASy Swiss-Prot

BLAST of CB293718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72


Match Name	E-value	Identity	Description
CB2C_SOLLC	4.133e-33	93.15	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2B_SOLLC	4.133e-33	93.15	Chlorophyll a-b binding protein 1B, chloroplastic ...	[more]
CB2A_SOLLC	4.133e-33	93.15	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2F_SOLLC	7.049e-33	91.78	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	7.049e-33	91.78	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB2G_SOLLC	9.206e-33	91.78	Chlorophyll a-b binding protein 3C, chloroplastic ...	[more]
CB24_TOBAC	9.206e-33	91.78	Chlorophyll a-b binding protein 40, chloroplastic ...	[more]
CB24_PETSP	9.206e-33	91.78	Chlorophyll a-b binding protein 25, chloroplastic ...	[more]
CB23_NICPL	9.206e-33	91.78	Chlorophyll a-b binding protein C, chloroplastic O...	[more]
CB22_TOBAC	9.206e-33	91.78	Chlorophyll a-b binding protein 21, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS01_06cc03_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB293718 ID=CB293718; Name=CB293718; organism=Citrus sinensis; type=EST; length=263bp
AACCCACTAGAGAAAAACTCTTATCAACCAAAACTCACTTTCCGGGGACA
AAGTTGGTGGCGAAGGCCCAGGCATTGTTATGGACAGGGTCATCCAAGTG
GTCGGCCAATTTCTCTAAGGGACCCTTGCCGGTGACAATGGCCTGAACAA
ATAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTA
ACCTTGAGCTCAGCAAAAGCCTCCGGGTCTTCAGCCAAACCCAATGGATC
ACAGCTCCTCGTG