CB293719

Overview
NameCB293719
Unique NameCB293719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:663..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.026e-36
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.750e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKE+KNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.750e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKE+KNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.286e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.286e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            +FDPLGLADDPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.985e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.985e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.985e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLADDPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  194 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.985e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CB293719 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.985e-36
Identity = 71/73 (97.26%), Postives = 73/73 (100.00%), Query Frame = 3 
Query:    9 SFDPLGLADDPEAFAELKVKEIKNGRMAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 227
            SFDPLGLA+DPEAFAELKVKEIKNGR+AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of CB293719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_ORYSJ1.026e-3698.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA1.750e-3697.26Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.750e-3697.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP2.286e-3697.26Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_ORYSJ2.286e-3697.26Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC2.985e-3697.26Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC2.985e-3697.26Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP2.985e-3697.26Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL2.985e-3697.26Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC2.985e-3697.26Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06cc03_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cc03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293719 ID=CB293719; Name=CB293719; organism=Citrus sinensis; type=EST; length=345bp
GCCCTAGGAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTT
GCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGATGGCTATGTTCTC
CATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAG
AGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCC
TACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTT
TTCTCTTTTCCGTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGG
AAGCTTTAATTTGAGTTGTGATTATTTATAAAAAAAAAAAAAAAA
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