CB293751

Overview
NameCB293751
Unique NameCB293751
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293751_ssr133 microsatellite CB293751_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293751_ssr631 microsatellite CB293751_ssr631:631..642. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2677 contig Csv1_Contig2677:145..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293751 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   73 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 453
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129          
BLAST of CB293751 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.742e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   73 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 453
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129          
The following BLAST results are available for this feature:
BLAST of CB293751 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ4.742e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI4.742e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ce02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ce02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293751 ID=CB293751; Name=CB293751; organism=Citrus sinensis; type=EST; length=771bp
GCCCTTAGAGTCACTCAGATTTTTCTTTCAGAGGGACTCATCCGATTGGA
AAAAAGAAGAAAGATGGGGTACTGGAAATCCAAGGTCCTCCCAAGGATCA
AGAAAGTTTTCGAGAAAAACGGAACCAAGAAAGCTGCTGCTGCTGAGGCT
TGCAAGTCCTTTGATGATTCAGAGGAAGAAATCAATAAAGAGTTTGAAGA
GAAGAAGCCTGAGCTCCAACCTAAAGTGGTCGAAATCTATGAAGCTTCTT
CAGCTGAAATCAAGACCCTGGTCAAGGATCGCAAGGAGGATGGACTTAAG
AAGCACTCCACTGCTGTGCACAAGTTACTTGAAGAACTCGTTAAAATCGA
GTTTCCAGGATCAAAAGCAGTAAGTGAAGCATCGTCAAAGTTTGGGGCAG
CCTCTGTTCCGGGGCCAGTTTTCTTCATATTTGAGAAGGTCTCAACGTTT
ATTGTTACTGAAGAAAAAGCAGCAGAGCCAGCAACCGCGGCAGCAGGAGA
AGAAACAAAACCAGAACAAGAGACAACAAGTAGTAGTACCGCCGCAGTCA
CAGAGAAGGACGACGTAGTTGTTGAGGAAGAGAAGAAAGAAGAGGCCCCC
GCCGGCCCTGAGAAAACTGAGCCGGCAGAAGCCGCCGCCGCCCCAGCCCC
AACTGAGCCTCTTCCTGCCGCCGCCAAGGAGGACCAACCAGCTGCTGCAG
AGCCACCAAAGCCTTGAGAACATGCATCAACTGACAAGACAAATTCATAT
CCATATATACATAGATATATA
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