CB293753

Overview
NameCB293753
Unique NameCB293753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6065 contig Csv1_Contig6065:1419..2203. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293753 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.975e-30
Identity = 78/194 (40.21%), Postives = 101/194 (52.06%), Query Frame = -2
Query:  233 GFEDIFGAMQDTNSLNQMLQNPAVTQMMQSLLSNPQYMNQILGLNPQLRSMVDSNSQLREMIQNPEFLRQLTNPETMQQMVTLQQFLLTQLGRAQSXXXXXXXXXXXXXPNMG------LEMLMNMFGGLGA--------GSLAVPNRSDVPPEQLYATQLSQLQEMGFFDTQENIRALIATAGNVHAAVERLL 772
            G E + G   D   + Q+L NP   QMMQ L+S+P  M Q++ +NPQLR M+DSN QLRE + NPEFL  +TNPE M  M+ LQQ + T                      MG           NMFGG+G          S   P  +  PPEQ +  QL QL+E+GF D   NI AL +T GN++ A++RLL
Sbjct:  331 GMEGMLG--MDPERVQQLLNNPVAQQMMQRLMSDPAMMQQMITMNPQLRQMMDSNPQLREAMNNPEFLNMMTNPENMNAMMQLQQAMGTLRNNGVFPGGMGGMGGMGGMGGMGGMGGMDFSQFGNMFGGMGGMGGMGNNNSSTTRPPVNQEPPEQRFRLQLEQLEELGFVDRAANISALTSTNGNINLAIDRLL 522          
The following BLAST results are available for this feature:
BLAST of CB293753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBQL_DICDI1.975e-3040.21Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_06ce04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ce04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293753 ID=CB293753; Name=CB293753; organism=Citrus sinensis; type=EST; length=785bp
TCTTAATACCGAGTATGTACAGAGACACTCAGGTCCGACAGAACTCTCTA
GAAAGAGAGCAAGTACACAGACAAGTTTTCAGCCCTTACTATGATATATA
ACTAAAATTATTCATACCCAAAATGGGCTTTGAATATGACTCCAGTTCAA
CCGATTGATCCCCACCAGTCCTTATCACGGCACTAACCAGGTGATATTAA
ACATTGATAGCAACCTACTGACCAGAATTCCCCAAGAGTCGCTCCACTGC
AGCATGGACATTTCCAGCAGTTGCAATTAAAGCCCGAATATTTTCTTGTG
TATCAAAGAAACCCATTTCTTGAAGTTGTGACAACTGGGTGGCATATAAT
TGCTCTGGAGGCACATCAGATCTGTTAGGAACAGCTAGGCTGCCCGCCCC
AAGTCCACCAAACATGTTCATTAACATCTCCAACCCCATGTTAGGAGTCC
CTGTGCCTCCACCAGTCTGGCCTGGTTGCTGCGTTGACTGTGCCCGACCA
AGTTGAGTCAAGAGAAATTGCTGCAAAGTCACCATTTGCTGCATCGTCTC
AGGATTAGTCAACTGACGAAGAAATTCAGGATTTTGTATCATTTCTCTCA
GTTGAGAATTGGAATCAACCATGCTGCGCAGCTGTGGATTAAGACCAAGA
ATCTGGTTCATGTACTGGGGATTGGAGAGAAGGCTTTGCATCATTTGTGT
GACAGCTGGATTTTGCAACATCTGGTTCAGTGAATTGGTGTCCTGCATTG
CACCGAAAATGTCTTCAAAACCCAGGGAACTAAGT
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