CB293768

Overview
NameCB293768
Unique NameCB293768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1381 contig Csv1_Contig1381:91..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.057e-73
Identity = 137/201 (68.16%), Postives = 158/201 (78.61%), Query Frame = 2
Query:  137 MNIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK-KEQLEFGELEWIADMGIFNDQLPQEALAAAEVPQLPVS 733
            M IQCDVCE+APAT+ICCADEAALCAKCDVEVHAANKLASKHQRL L  LS K PPCDIC EKAAFIFCVEDRAL C+DCDE  H+P + SANHQRFLATGIRVALSS SC+++ E+N  +P NQQ+     K PTQQ +  S  WA D+F  +SD + S K KEQL+ GEL+W+A+MG+F DQ  QEAL  AEVP+L  S
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHFDPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLDLGELDWLAEMGLFGDQPDQEALPVAEVPELSFS 198          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.604e-72
Identity = 140/215 (65.12%), Postives = 162/215 (75.35%), Query Frame = 2
Query:  137 MNIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNISEPPN--QQASQTSVKMPTQQ----SSGISSPWAVDDFLQFSDFESSGKKEQLEF--GELEWIADMGIFNDQLPQEALAAAEVPQLPVSQSNNLIS 754
            M IQCDVCE+APATVICCADEAALC +CD+E+HAANKLASKHQRL L  LS K P CDICQEKAAFIFCVEDRAL C+DCDE IH   S SANHQRFLATGI+VAL+S+ CSK+ E+N  EP N  Q+A+Q   K  +QQ    SS    PWAVDDF  FSD ES+ KK QL+   GEL+W +DMG F DQ+  +AL AAEVP+L VS   ++ S
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAAEVPELSVSHLGHVHS 215          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 64/108 (59.26%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  137 MNIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS 460
            M IQC+VCE A ATV+CCADEAALC  CD ++HAANKLA KHQR+ L   ++ +P CDICQE + F FC++DRAL C+ CD  IH+     + HQRFL TGI+V L S
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLES 108          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 67/150 (44.67%), Postives = 91/150 (60.67%), Query Frame = 2
Query:  137 MNIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-CDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQ---ASQTSVKMPTQQSSGISSP 568
            M I+CDVC++  A+V C ADEA+LC  CD +VH ANKLASKH R  LL    SN   P CDICQ+K A +FC +DRA+ CKDCD  IH+    +  H RFL TG++++ +SS  K   ++ S   + Q      +S+  P      +S+P
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAP 150          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.500e-19
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  149 CDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR--FLATGIRVALSSSCSKDAERNISEPPNQ-----------QASQTSVKMPTQ-QSSGISSPWAV-DDFLQFSDFESSGKK 622
            CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   A  FC  D A  C  CD  IHS   L+  HQR   L        S++ +   E  +++P N+           +A   S  +P   ++SG ++ +++ D+FL   D+ SS K+
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQ 175          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 43/113 (38.05%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  149 CDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 487
            CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C++  A + C  D A  C  CD  IHS   LS  H+R   T    A+  + S  +  N
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVN 111          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 53/169 (31.36%), Postives = 75/169 (44.38%), Query Frame = 2
Query:  149 CDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKKEQLEFGELEWI 655
            CD C+ A A + C  D A LC  CD +VHAANKLAS+H R+ +         C++C++  A + C  D A  C  CD  IHS   L+  H+R   T    ++SS  S                 T+V               +DD   FSD + +G +E+ E     W+
Sbjct:    6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGS--------------VKHTAVNF-------------LDD-CYFSDIDGNGSREEEEEEAASWL 137          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.520e-15
Identity = 44/110 (40.00%), Postives = 54/110 (49.09%), Query Frame = 2
Query:  149 CDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDA 478
            CD C  A  TV C AD A LC  CD  VHAAN++AS+H+R+ +         C  C+   A   C  D A  C  CD  IHS   L+  HQR     I    ++SCS  A
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR---VPILPLSANSCSSMA 113          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.226e-14
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 2
Query:  149 CDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 424
            CD C     TV C AD A LC  CD +VH+AN++AS+H+R+ +         C+ C+   A   C  D A  C  CD  +HS   L+  HQR
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102          
BLAST of CB293768 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 35/85 (41.18%), Postives = 48/85 (56.47%), Query Frame = 2
Query:  149 CDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGS 403
            CD C+ + A V C AD A LC  CD +VH AN+L +KH R LL         CD C E  + +FC  +R++ C++CD   H+  S
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL---------CDSCNESPSSLFCETERSVLCQNCDWQHHTASS 88          
The following BLAST results are available for this feature:
BLAST of CB293768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
STH_ARATH1.057e-7368.16Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STO_ARATH2.604e-7265.12Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STHY_ARATH3.112e-3359.26Probable salt tolerance-like protein At1g78600 OS=... [more]
STHX_ARATH7.175e-3044.67Probable salt tolerance-like protein At1g75540 OS=... [more]
COL1_ARATH1.500e-1933.53Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL3_ARATH2.027e-1638.05Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH5.897e-1631.36Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL2_ARATH6.520e-1540.00Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
CONS_ARATH4.226e-1439.13Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL13_ARATH1.041e-1241.18Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06cf04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cf04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293768 ID=CB293768; Name=CB293768; organism=Citrus sinensis; type=EST; length=760bp
GCACTATGATTTTCTTTAAAGGGCTATTGGGATTTTCTCTTCAAAAGAAG
TTTCAAGGATGAAAATTTAATCTTGAGTTTGAATAGATTGGTTATTTTTC
CTTTTATATGTGTAAATATATATAAAGAGTGAAAAGATGAATATACAGTG
TGATGTGTGTGAGAGAGCTCCAGCAACAGTGATTTGCTGTGCAGATGAGG
CTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCACGCAGCAAACAAGCTA
GCTAGCAAGCACCAGAGGCTTCTTCTTCAGTGTCTTTCCAATAAGCTTCC
TCCATGTGATATATGCCAAGAAAAGGCAGCTTTCATTTTCTGTGTGGAAG
ACAGAGCACTCTTCTGTAAGGACTGTGATGAACCTATCCATTCACCTGGT
AGTCTTTCTGCTAACCATCAGAGGTTTTTGGCCACCGGAATCCGAGTAGC
CTTAAGCTCTAGTTGTTCCAAAGATGCTGAAAGGAATATATCTGAGCCAC
CAAATCAGCAAGCATCACAAACTTCAGTAAAAATGCCTACACAGCAATCT
TCGGGCATCTCATCTCCTTGGGCCGTGGACGACTTCTTACAATTCTCAGA
TTTTGAATCCTCCGGAAAGAAAGAGCAACTCGAGTTTGGAGAGCTTGAAT
GGATAGCAGACATGGGAATATTCAACGACCAACTTCCTCAGGAGGCTCTA
GCAGCTGCTGAAGTACCTCAACTCCCGGTGTCCCAGTCCAACAACTTAAT
ATCATCATAC
back to top