CB293772

Overview
NameCB293772
Unique NameCB293772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig878 contig Csv1_Contig878:34..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293772 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 3 
Query:   51 MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 488
            MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S   +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A E +I++EAY+ LRDR PYP DQV+++++GKFAFIL+DS +   FLA
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB293772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC7.477e-2941.89Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06cf07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06cf07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293772 ID=CB293772; Name=CB293772; organism=Citrus sinensis; type=EST; length=739bp
GCACTAGGTTTTTATCGTGGCCAGTGAAGAACGATCGTGAGGGAGAGAAA
ATGCTGGCAGTGTTTGACAAATCGGTGGCCAAAGCCCCAGAGGCTCTGCA
GAGTCCACAGACCGAGTCTGCTTGCGCGCTGAAGAATGGTCTATTGGCTA
ACCACTTTAGCTCTGTTCACCCTGGCTCTGTCACTGTGAATCTTGGCTCT
TCTGGCGTCATTGCTTACTCCCTTAACAGGCAAAATCCTCTTTTGCCAAG
ATTATTTGCGGTTGTGGATGACATTTTCTGCTTGTTCCAAGGCCACATTG
AGAACGTTGCTCTGCTTAAGCAGCAATATGGACTAAACAAAACAGCAAAT
GAGGTCATCATTGTCATTGAGGCTTACAGAACTCTCAGGGATCGAGGTCC
TTATCCTGCCGATCAGGTTGTCAGAGACATTCAAGGGAAGTTTGCATTTA
TTCTCTATGACAGCTCTTCGAAAAACGCATTCTTAGCTTCTGATGCTGAT
GGGAGTGTTCCCTTCTTCTGGGGTACTGATTCTGAAGGCCATCTTGTTCT
TTCCGATGATGTAGAGATTGTGAAGAAGGGCTGTGGGAAGTCTTTTGCAC
CATTCCCTAAAGCATGCTTCTTTACATCTTCTGGTGGATTGAGGAGCTTC
GAGCACCCCATGAATGAGCTGAAGCCTGTGCCAAGGGTAGATAGTTCAGG
TCAGGTTTGTGGTTCAACTTTCAAGGTGGATGCTGAGAC
back to top