CB293835

Overview
NameCB293835
Unique NameCB293835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293835_ssr78 microsatellite CB293835_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13771 contig Csv1_Contig13771:128..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 504.982 bits (1299), Expect = 1.723e-142
Identity = 239/243 (98.35%), Postives = 240/243 (98.77%), Query Frame = 3
Query:    9 DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAVVLGNKTALTGGSGKVVD GPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLL EGLNIYATTASNAEE+SWGTYCPGEIPGPPPEYSTCLGDL
Sbjct:   29 DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLLEGLNIYATTASNAEESSWGTYCPGEIPGPPPEYSTCLGDL 271          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 417.927 bits (1073), Expect = 2.770e-116
Identity = 196/243 (80.66%), Postives = 215/243 (88.48%), Query Frame = 3
Query:    9 DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAV+LG+KTA+ GGSGKVVD GPNDHIFIFYSDHGGPGVLGMPTS Y+YA++L DVLKKKHA G YKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEE+SWGTYCPGE P PPPEY TCLGDL
Sbjct:   33 DVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTSPYLYANDLNDVLKKKHALGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEEPSPPPEYETCLGDL 270          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 4.576e-111
Identity = 187/243 (76.95%), Postives = 209/243 (86.01%), Query Frame = 3
Query:    9 DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            D L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTGGSGKVVD GPNDHIF++Y+DHGGPGVLGMP   Y+YA +L +VLKKKHASG YKSLVFYLEACESGSIFEGLLP+ LNIYATTASNAEE+SWG YCPG+ P PPPEYSTCLGDL
Sbjct:   31 DYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVYYTDHGGPGVLGMPVGPYLYASDLNEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPDDLNIYATTASNAEESSWGYYCPGDKPPPPPEYSTCLGDL 267          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 398.282 bits (1022), Expect = 2.271e-110
Identity = 188/243 (77.37%), Postives = 213/243 (87.65%), Query Frame = 3
Query:    9 DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            D++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AV+LGNKTAL GGSGKVVD GPNDHIFI+YSDHGGPGVLGMPTS  +YA++L DVLKKK+ASG YKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEE+SWGTYCPGE P PP EY TCLGDL
Sbjct:   21 DVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTSPNLYANDLNDVLKKKYASGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEESSWGTYCPGEDPSPPSEYETCLGDL 255          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.246e-108
Identity = 186/243 (76.54%), Postives = 207/243 (85.19%), Query Frame = 3
Query:    9 DILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            D L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTGGSGKVV+ GPNDHIFIFYSDHGGPGVLG P   YIYA +L +VLKKKHASG YK+LVFYLEACESGSIFEGLLPE +N+YATTASNA+E+SWGTYCPGE P PPPEYSTCLGDL
Sbjct:   31 DFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTGGSGKVVNSGPNDHIFIFYSDHGGPGVLGSPAGPYIYASDLNEVLKKKHASGTYKNLVFYLEACESGSIFEGLLPEDINVYATTASNADESSWGTYCPGEDPSPPPEYSTCLGDL 260          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 4.746e-100
Identity = 165/220 (75.00%), Postives = 193/220 (87.73%), Query Frame = 3
Query:   78 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ GGSGKVVD  PND IF++YSDHGGPGVLGMP   Y+YA + I+VLKKKHA+G YK +V Y+EACESGSIFEG++P+ ++IY TTASNA+E+SWGTYCPG  P PPPE++TCLGDL
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLYYSDHGGPGVLGMPNLPYLYAMDFIEVLKKKHAAGGYKKMVIYVEACESGSIFEGIMPKDVDIYVTTASNAQESSWGTYCPGMEPSPPPEFTTCLGDL 273          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.076e-99
Identity = 167/242 (69.01%), Postives = 197/242 (81.40%), Query Frame = 3
Query:   12 ILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAV+LG+K+ L GGSGKV++  P D IFI+YSDHGGPG+LGMP   Y+YA + IDVLKKKHASG+YK +V Y+EACESGS+FEG++P+ LNIY TTASNA+E SWGTYCPG  P PPPEY TCLGDL
Sbjct:   42 VIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIYYSDHGGPGILGMPNMPYLYAMDFIDVLKKKHASGSYKEMVIYVEACESGSVFEGIMPKDLNIYVTTASNAQENSWGTYCPGMDPSPPPEYITCLGDL 271          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.292e-97
Identity = 162/218 (74.31%), Postives = 187/218 (85.78%), Query Frame = 3
Query:   84 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AV+LG+K+ + GGSGKV++  P D IFIFYSDHGGPGVLGMP + ++YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TTASNA+E S+GTYCPG  P PP EY TCLGDL
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKGGSGKVINSNPEDRIFIFYSDHGGPGVLGMPNAPFVYAMDFIDVLKKKHASGGYKEMVIYIEACESGSIFEGIMPKDLNIYVTTASNAQENSFGTYCPGMNPPPPEEYVTCLGDL 251          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.688e-97
Identity = 165/242 (68.18%), Postives = 196/242 (80.99%), Query Frame = 3
Query:   12 ILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + GGSGKV++  P D IF++YSDHGGPGVLGMP   Y+YA + IDVLKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TTASNA+E SWGTYCPG  P PPPEY TCLGDL
Sbjct:   40 VIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKGGSGKVINSKPEDRIFVYYSDHGGPGVLGMPNMPYLYAMDFIDVLKKKHASGGYKEMVIYVEACESGSIFEGIMPKDLNIYVTTASNAQENSWGTYCPGMYPPPPPEYITCLGDL 269          
BLAST of CB293835 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 346.28 bits (887), Expect = 1.024e-94
Identity = 155/221 (70.14%), Postives = 187/221 (84.62%), Query Frame = 3
Query:   75 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDIGPNDHIFIFYSDHGGPGVLGMPTSRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFEGLLPEGLNIYATTASNAEETSWGTYCPGEIPGPPPEYSTCLGDL 737
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ GGSGKV+   PNDHIF++Y+DHGGPGVLGMP + +IYA + I+ LKKKHASG YK +V Y+EACESGSIFEG++P+ LNIY TTASNA+E+S+GTYCPG  P PP EY TCLGDL
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVYYADHGGPGVLGMPNTPHIYAADFIETLKKKHASGTYKEMVIYVEACESGSIFEGIMPKDLNIYVTTASNAQESSYGTYCPGMNPSPPSEYITCLGDL 262          
The following BLAST results are available for this feature:
BLAST of CB293835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
VPE_CITSI1.723e-14298.35Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPEG_ARATH2.770e-11680.66Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_VICSA4.576e-11176.95Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPEA_ARATH2.271e-11077.37Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE1_PHAVU1.246e-10876.54Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPE_RICCO4.746e-10075.00Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
VPE_SOYBN3.076e-9969.01Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
LEGU_CANEN1.292e-9774.31Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE2_PHAVU1.688e-9768.18Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEB_ARATH1.024e-9470.14Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293835 ID=CB293835; Name=CB293835; organism=Citrus sinensis; type=EST; length=737bp
GCACTAGGGACATTCTGAAGCTACCATCGGAAGCCTATAGGTTCTTCCAT
AATGGTGGGGGAGGGGCAAAGGTCAACGATGATGATGATTCTGTCGGCAC
GAGATGGGCCGTCCTGCTTGCCGGATCTAATGGCTTCTGGAATTACAGGC
ATCAGGCTGATATTTGTCATGCTTATCAACTCTTGAGGAAAGGTGGGCTG
AAGGATGAAAATATTATTGTTTTCATGTATGATGACATCGCTTTCAATGA
AGAGAACCCAAGGCCTGGAGTCATCATTAACCACCCCCATGGCGATGATG
TTTACAAAGGAGTTCCAAAGGATTACACGGGGGAAGATGTTACTGTTGAA
AACTTTTTTGCTGTTGTCCTGGGAAATAAAACAGCTCTTACAGGGGGCAG
TGGGAAGGTTGTGGATATCGGCCCCAATGATCATATTTTCATATTCTACT
CAGATCATGGGGGCCCTGGGGTGCTAGGGATGCCCACCAGTCGATACATA
TATGCTGATGAACTGATCGATGTCTTAAAAAAGAAGCATGCTTCTGGGAA
CTACAAAAGCTTGGTATTTTATCTCGAAGCCTGTGAATCTGGAAGTATCT
TTGAGGGTCTTCTTCCTGAGGGCTTAAATATCTATGCAACCACAGCTTCA
AATGCTGAAGAGACCAGTTGGGGGACCTATTGTCCTGGAGAGATTCCTGG
TCCTCCCCCTGAATATAGCACTTGTTTGGGTGACTTG
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