CB293836

Overview
NameCB293836
Unique NameCB293836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6025 contig Csv1_Contig6025:1085..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.256e-60
Identity = 115/164 (70.12%), Postives = 144/164 (87.80%), Query Frame = -2
Query:    5 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 496
            PRIF+ AG+ +  ++LLATVAVG VKT+FILVATFLLD+IGRRPLLL+SV GM+ SLA L  SLT+IDQS KKV+WAV +AI+TV++YVA FSIG GPIT VYSSEI PL+LR+QG+S+GV+VNRVTSGV+S++FL +SKA+T GG+F+L+  IA+VAWVFFYT
Sbjct:  318 PRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTIIDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYT 481          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.662e-52
Identity = 99/165 (60.00%), Postives = 134/165 (81.21%), Query Frame = -2
Query:    5 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVI-WAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 496
            P IF +AG+ SK+++LLATVAVG VKT FI+V T L+D+ GRR LLL+S+ GM  SL  L  SLTVID++  + + WA+GLA++TV+++VA FS+G GP+T VY+SEI P++LRAQGAS+GVM+NR+ SG++ MTFLSLSK +TIGG+F L+A +A  AWVFF+T
Sbjct:  308 PTIFSRAGLKSKNDQLLATVAVGVVKTLFIVVGTCLVDRFGRRALLLTSMGGMFFSLTALGTSLTVIDRNPGQTLKWAIGLAVTTVMTFVATFSLGAGPVTWVYASEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAVAAWVFFFT 472          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.783e-52
Identity = 99/165 (60.00%), Postives = 134/165 (81.21%), Query Frame = -2
Query:    5 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVI-WAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYT 496
            P IF KAG+ SK+++LLATVAVG VKT FI+V T ++D+ GRR LLL+S+ GM  SL  L  SLTVI+++  + + WA+GLA++TV+++VA FSIG GP+T VY SEI P++LRAQGAS+GVM+NR+ SG++ MTFLSLSK +TIGG+F L+A +A+ AWVFF+T
Sbjct:  308 PTIFSKAGLKSKNDQLLATVAVGVVKTLFIVVGTCVVDRFGRRALLLTSMGGMFLSLTALGTSLTVINRNPGQTLKWAIGLAVTTVMTFVATFSIGAGPVTWVYCSEIFPVRLRAQGASLGVMLNRLMSGIIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFT 472          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 1.817e-51
Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = -2
Query:    8 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 496
            PRIF+KAGIT+KD+  L T+ VG +KTTFI  AT LLDK+GRR LLL+SV GM+ +L  L   LT+   +  K+ WA+ L+I    S+VAFFSIG+GPIT VYSSE+ PLKLRAQGAS+GV VNRV +  VSM+FLSL+ AIT GG+FF++A +A+VAW FF+
Sbjct:  299 PRIFKKAGITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIALTMLGFGLTMAQNAGGKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMNATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFF 461          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.100e-51
Identity = 100/163 (61.35%), Postives = 130/163 (79.75%), Query Frame = -2
Query:    8 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 496
            PRIF+KAG+ SKD+ LLATV VG  K  FI++ATFLLDK+GRR LLL+S  GM+ +L +LA+SLT++ Q   ++ WA+ L+I +  ++VAFFSIG+GPIT VYSSEI PL+LRAQGASIGV VNR+ +  VSM+FLS++KAIT GG FF++A IA  AW FF+
Sbjct:  304 PRIFKKAGVVSKDKLLLATVGVGLTKAFFIIIATFLLDKVGRRKLLLTSTGGMVFALTSLAVSLTMV-QRFGRLAWALSLSIVSTYAFVAFFSIGLGPITWVYSSEIFPLRLRAQGASIGVAVNRIMNATVSMSFLSMTKAITTGGVFFVFAGIAVAAWWFFF 465          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.264e-36
Identity = 79/163 (48.47%), Postives = 114/163 (69.94%), Query Frame = -2
Query:    8 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 496
            P I ++AGI  + + L ATVAVG  KT FIL ATFL+D +GR+PLL  S  GM   L  L+ +LT + Q        + LA+  V   VAFFSIGMGP+  V +SEI PL+LRAQ +++G + NRV SG+V+M+FLS+S+AIT+GG+FF+++ +++++ +F Y
Sbjct:  324 PEILKEAGIQDETKLLAATVAVGVTKTVFILFATFLIDSVGRKPLLYVSTIGMTLCLFCLSFTLTFLGQG----TLGITLALLFVCGNVAFFSIGMGPVCWVLTSEIFPLRLRAQASALGAVGNRVCSGLVAMSFLSVSRAITVGGTFFVFSLVSALSVIFVY 482          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: EDL16_ARATH (Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.189e-18
Identity = 58/158 (36.71%), Postives = 86/158 (54.43%), Query Frame = -2
Query:   14 FEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 487
            F KAG TS     L T+A+  V+    ++ T L+DK GRRPL++ S  G+         S  +  QS   + W   LA+  VL YVA FSIGMGP+  V  SEI P+ ++    S+ V+VN   +  VS TF +   + +  G+F+LY++ A+   +F
Sbjct:  306 FVKAGFTSGK---LGTIAIACVQVPITVLGTILIDKSGRRPLIMISAGGIFLGCILTGTSFLLKGQS-LLLEWVPSLAVGGVLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTF-NFLMSWSSPGTFYLYSAFAAATIIF 458          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: ERDL6_ARATH (Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.459e-18
Identity = 58/162 (35.80%), Postives = 88/162 (54.32%), Query Frame = -2
Query:   14 IFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTV---IDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 490
            IFE AG+TS +    AT  VG ++     ++T+L+DK GRR LL  S  GM  SL  +A +  +   +        W   L++  V++ V FFS+GMGPI  +  SEILP+ ++    SI  + N   S +++MT  +L  A + GG+F LY  + +   VF
Sbjct:  309 IFESAGVTSSNA---ATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMT-ANLLLAWSSGGTFTLYGLVCAFTVVF 466          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17
Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = -2
Query:   14 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVF 496
            P+ F   G       +L TV +G V     LVA  ++DKIGR+PLLL   AGM+ SL  LA+     D +     W   + +     ++  F++  GP+  V   E+ PL +R  G  +  ++  V + +VS+T+  L +AI I   F +YA+I  +A++F
Sbjct:  264 PKTFTNVGF-GNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGNAGMVISLIVLALVNLFFDNT-PAASWTTVICLGV---FIVVFAVSWGPVVWVMLPELFPLHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLF 419          
BLAST of CB293836 vs. ExPASy Swiss-Prot
Match: XYLL1_ARATH (D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 52/163 (31.90%), Postives = 85/163 (52.15%), Query Frame = -2
Query:    8 PRIFEKAGITSKDEKLLATVAVGFVKTTFILVATFLLDKIGRRPLLLSSVAGMIASLATLAISLTVIDQSHKKVIWAVGLAISTVLSYVAFFSIGMGPITMVYSSEILPLKLRAQGASIGVMVNRVTSGVVSMTFLSLSKAITIGGSFFLYASIASVAWVFFY 496
            P I + AG ++  +    ++ +G +K     V+  ++D++GRRPLLL  V+GM+ SL  L          +K V     +A++ +L YV  + +  GPI  +  SEI PLKLR +G S+ V+VN   + +V+  F  L + +  G  F  +  I  V+  F Y
Sbjct:  329 PSILQTAGFSAAADATRISILLGLLKLVMTGVSVIVIDRVGRRPLLLCGVSGMVISLFLLGSYYMF----YKNV---PAVAVAALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGISLAVLVNFGANALVTFAFSPLKELLGAGILFCAFGVICVVSLFFIY 484          
The following BLAST results are available for this feature:
BLAST of CB293836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PLT5_ARATH1.256e-6070.12Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT2_ARATH3.662e-5260.00Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT1_ARATH4.783e-5260.00Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT6_ARATH1.817e-5160.74Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT3_ARATH3.100e-5161.35Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT4_ARATH1.264e-3648.47Probable polyol transporter 4 OS=Arabidopsis thali... [more]
EDL16_ARATH1.189e-1836.71Sugar transporter ERD6-like 16 OS=Arabidopsis thal... [more]
ERDL6_ARATH3.459e-1835.80Sugar transporter ERD6-like 6 OS=Arabidopsis thali... [more]
YWTG_BACSU2.242e-1732.30Putative metabolite transport protein ywtG OS=Baci... [more]
XYLL1_ARATH8.521e-1731.90D-xylose-proton symporter-like 1 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293836 ID=CB293836; Name=CB293836; organism=Citrus sinensis; type=EST; length=497bp
GACACGTGTAAAAAAACACCCACGCAACTGATGCAATTGACGCGTATAGA
AAGAAGGAGCCGCCAATCGTGATCGCTTTACTAAGCGATAGGAAAGTCAT
CGATACGACCCCACTTGTGACCCTGTTCACCATCACCCCGATACTCGCTC
CCTGAGCGCGTAGCTTCAACGGCAGAATCTCTGAACTGTAAACCATCGTG
ATGGGCCCCATCCCGATTGAGAAAAACGCCACGTAGGATAAAACCGTTGA
GATGGCCAAACCAACGGCCCAGATCACCTTTTTGTGTGACTGATCGATGA
CTGTAAGAGAGATAGCAAGGGTCGCGAGCGAGGCGATCATGCCCGCAACA
CTGCTCAAAAGCAACGGACGCCGTCCGATTTTGTCGAGTAAAAACGTAGC
CACTAGGATGAAAGTGGTCTTGACAAATCCAACGGCTACAGTAGCGAGTA
ACTTTTCGTCTTTTGACGTAATCCCAGCTTTTTCAAAGATTCTAGGA
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