CB293838

Overview
NameCB293838
Unique NameCB293838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3406 contig Csv1_Contig3406:803..1622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 380.178 bits (975), Expect = 7.686e-105
Identity = 182/219 (83.11%), Postives = 188/219 (85.84%), Query Frame = -1
Query:  164 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQCS 820
            MVRSS TH+GWRT+ADGDAISIFGSSH+WIDHNSLSHCADGLVDAVMGSTAITISNNH+THHNEVMLLGHSDSY RDK MQVTIAYNHFG GLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRY AP N FAKEVTKRVDT AS WKGWNWRSEGDLL NGAYFT                 AKSSS+VG ITS AGAL CR+ RQCS
Sbjct:  212 MVRSSETHFGWRTMADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVMLLGHSDSYMRDKAMQVTIAYNHFGVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKRVDTPASHWKGWNWRSEGDLLQNGAYFTSSGAAASGSYARASSLSAKSSSLVGHITSDAGALPCRRGRQCS 430          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.093e-102
Identity = 175/218 (80.28%), Postives = 188/218 (86.24%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            MVRSSP+H+GWRT+ADGDA+SIFGSSHIWIDHNSLSHCADGLVDAVMGSTAIT+SNNH THHNEVMLLGHSDSYT+DK MQVTIAYNHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA PTINSQGNRY AP++ FAKEVTKRV+T AS+WK WNWRSEGDLLLNGA+F P                AK SSMV +ITS AGAL CRK R C
Sbjct:  253 MVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTKDKLMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYAAPMDRFAKEVTKRVETDASEWKKWNWRSEGDLLLNGAFFRPSGAGASASYGRASSLAAKPSSMVDTITSTAGALGCRKGRPC 470          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.314e-96
Identity = 169/218 (77.52%), Postives = 184/218 (84.40%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            MVRSSP+HYG+R++ADGDAISIFGSSHIWIDHNSLS+CADGLVDAVM STAIT+SNN  THHNEVMLLGHSDSYTRDK MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSA PTINSQGNR+ AP+N FAKEVTKR  T  S+WK WNWRSEGDL LNGA+FT                 AKSSS+VG++TS +GAL CR  R+C
Sbjct:  199 MVRSSPSHYGFRSMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGESKWKHWNWRSEGDLFLNGAFFTRSGAGAGANYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC 416          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.716e-96
Identity = 169/218 (77.52%), Postives = 180/218 (82.57%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            MVRSSP+HYGWRT+ADGD ISIFGSSHIWIDHNSLS+CADGL+DAVM STAITISNN+ THHNEVMLLGHSD+YTRDK MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSA+PTINSQGNRY AP N FAKEVTKR      QW+ WNWRSEGDL LNGA+FT                 AKSSS+VG IT  AGAL CR  R+C
Sbjct:  200 MVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMASTAITISNNYFTHHNEVMLLGHSDTYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYLAPRNRFAKEVTKRDYAGQWQWRHWNWRSEGDLFLNGAFFTRSGSGLGASYARASSLAAKSSSLVGVITYNAGALNCRGGRRC 417          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 8.518e-96
Identity = 164/218 (75.23%), Postives = 179/218 (82.11%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            MVRSS +HYGWRT+ADGD ISIFGSSHIWIDHNSLS CADGL+DA+MGSTAITISNN++THHNE +LLGH+DSYTRDK MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR+ AP N FAKEVTKRV     +W  WNWRS+GDL+LNGAYFT                 AKSSS+VG +TS +GAL CR    C
Sbjct:  201 MVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSLVGMLTSSSGALKCRIGTLC 418          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 8.518e-96
Identity = 165/218 (75.69%), Postives = 182/218 (83.49%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            MVRSSP+HYGWRT+ADGDAISIFGSSHIWIDHNSLS+CADGL+DA+MGSTAITISNN+MTHHNEVML+GHSDSYTRDK MQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHW MYAIGGSANPTINSQGNR+ AP N FAKEVTKRV +   +WK WNWRS+GDL+LNGAYFT                 AK +S+V  +T  +GAL CR   +C
Sbjct:  223 MVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYMTHHNEVMLMGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRFLAPGNPFAKEVTKRVGSWQGEWKQWNWRSQGDLMLNGAYFTKSGAAAPASYARASSLGAKPASVVSMLTYSSGALKCRIGMRC 440          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 6.749e-93
Identity = 154/218 (70.64%), Postives = 178/218 (81.65%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            MVRSSP H+GWRT++DGD +SIFG SH+W+DH S S+C DGL+DA+MGSTAIT+SNNHMTHH++VMLLGHSD+Y+RDK MQVTIA+NHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNR+ AP   F+KEVTK  D   S+WK WNWRS GDLLLNGA+FTP                AK SS+VG +TS +GAL CRK  +C
Sbjct:  191 MVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAITLSNNHMTHHDKVMLLGHSDTYSRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNIRFSKEVTKHEDAPESEWKRWNWRSSGDLLLNGAFFTPSGGAASSSYAKASSLGAKPSSLVGPLTSTSGALNCRKGSRC 408          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 1.078e-90
Identity = 153/217 (70.51%), Postives = 176/217 (81.11%), Query Frame = -1
Query:  167 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 817
            VR SP+HYGWRT +DGDA+SIFG SH+W+DH SLS+CADGL+DA+ GSTAITISNN+++HHN+VMLLGHSDSYTRDK MQVTIA+NHFGEGL+QRMPRCRHGYFHVVNNDYTHW+MYAIGGSA PTINSQGNR+ AP +   KEVTK  D   S+WK WNWRSEGDL LNGA+FTP                A+ SS+V S+TS AGAL CRK  +C
Sbjct:  192 VRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAITISNNYLSHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPRSKWKKWNWRSEGDLFLNGAFFTPSGGGASSSYAKASSLSARPSSLVASVTSNAGALFCRKGSRC 408          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.095e-90
Identity = 158/217 (72.81%), Postives = 178/217 (82.03%), Query Frame = -1
Query:  167 VRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 817
            VRSSP+  G+R  ADGDAI+IFGSSHIWIDHNSLS+C DGLVD V GSTAITISNNH THH+EVMLLGH+DSYTRDK MQVT+AYNHFGEGLIQRMPRCRHGYFHVVNNDYTHW+MYAIGGSANPTINSQGNR+ AP N  AKEVTKR+DT  ++W  WNWRSE DLL+NGA+FTP                AK +SMV +IT+ AGAL+CR+ + C
Sbjct:  236 VRSSPSQAGFRGTADGDAINIFGSSHIWIDHNSLSNCTDGLVDVVNGSTAITISNNHFTHHDEVMLLGHNDSYTRDKMMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWKMYAIGGSANPTINSQGNRFAAPKNHSAKEVTKRLDTKGNEWMEWNWRSEKDLLVNGAFFTP-SGEGASGDSQTLSLPAKPASMVDAITASAGALSCRRGKPC 451          
BLAST of CB293838 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.746e-86
Identity = 146/218 (66.97%), Postives = 171/218 (78.44%), Query Frame = -1
Query:  167 MVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXAKSSSMVGSITSGAGALTCRKSRQC 820
            M++  P H GW   +DGDA++IFG  H+WIDH SLS+C DGL+DA+ GSTAITISNNHMTHH++VMLLGHSDSYT+DK MQVTIA+NHFGEGL+QRMPRCRHGYFHVVNNDYTHWEMYAIGGSA+PTI SQGNR+ AP   F KEVTK  D   S+W+ WNWRSEGD+LLNGAYF                  A+ SS+VGSIT+ AG L+CR+ R+C
Sbjct:  192 MIKDGPHHTGWWMQSDGDAVAIFGGKHVWIDHCSLSNCDDGLIDAIHGSTAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFLAPNTRFNKEVTKHEDAPESKWRDWNWRSEGDMLLNGAYFRESGAEAPSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC 409          
The following BLAST results are available for this feature:
BLAST of CB293838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PEL1_ARATH7.686e-10583.11Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH2.093e-10280.28Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH1.314e-9677.52Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH1.716e-9677.52Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH8.518e-9675.23Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH8.518e-9675.69Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL18_ARATH6.749e-9370.64Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH1.078e-9070.51Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL9_ARATH4.095e-9072.81Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL11_ARATH2.746e-8666.97Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293838 ID=CB293838; Name=CB293838; organism=Citrus sinensis; type=EST; length=820bp
TTTTTTTTTTTTTTTTTGTGAAGCAGATATACGGTAGAGATTGACACAAT
GACCAGATTGTGGATAAATTGGATAGGTGATATACTATATAGAAGAAAAA
TGAAAAACAAAACAGAAATTCGATGGCCATTTCTTTTTTCGGCCAATTTA
ATGATGAATACTATGAGCACTGACGGCTCTTGCGGCAAGTAAGAGCACCA
GCACCAGAAGTAATGGATCCAACCATGGAGGAAGACTTGGCTCCCAAGCT
TGAAGCACGAGCATAGCTAGCTGAGGCTCCTGCTCCGGATGGGGTAAAGT
AGGCACCGTTCAGCAAGAGGTCTCCTTCAGATCTCCAGTTCCAGCCCTTC
CACTGGCTTGCAGCTGTGTCCACCCTCTTTGTTACCTCCTTTGCGAAGGC
ATTCAATGGAGCATTGTATCTGTTTCCCTGGCTGTTGATGGTGGGGTTTG
CACTTCCACCAATGGCATACATTTCCCAGTGAGTGTAGTCATTGTTCACC
ACATGGAAATAACCATGTCTACACCTTGGCATTCTCTGAATGAGTCCCTC
TCCAAAATGGTTGTAAGCAATGGTTACTTGCATTTGCTTGTCCCTGGTGT
AGGAATCACTGTGACCCAGCAGCATAACCTCATTGTGGTGGGTCATGTGA
TTGTTTGAAATGGTAATGGCAGTAGATCCCATGACGGCATCAACAAGTCC
ATCAGCACAATGGGAGAGTGAATTGTGATCAATCCATATATGGCTAGAGC
CAAAAATTGATATGGCATCACCATCAGCCACTGTCCTCCACCCATAGTGA
GTCGGTGAGCTCCTAACCAT
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