CB293839

Overview
NameCB293839
Unique NameCB293839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3406 contig Csv1_Contig3406:183..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL1_ARATH (Probable pectate lyase 1 OS=Arabidopsis thaliana GN=At1g04680 PE=2 SV=2)

HSP 1 Score: 432.18 bits (1110), Expect = 1.543e-120
Identity = 199/223 (89.24%), Postives = 213/223 (95.52%), Query Frame = 3
Query:  120 SKHAVDNPDEIA----SMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            ++HAV NPDE+A    ++ EMS RN TERRKLGYF+CGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDD+PVNP+PGTLRHAVIQD+PLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVI+HGLH+HDCKPTGNAMVRSS TH+GWRT+ADGDAISIFGSSH+WIDHNSLSHCADGLVDAVMGSTAI
Sbjct:   41 NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDDCWRCDPNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDNPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIVHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAI 263          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL15_ARATH (Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 7.923e-117
Identity = 204/285 (71.58%), Postives = 234/285 (82.11%), Query Frame = 3
Query:    3 SVLASVRNEQDVSVSRKMKAE---SSMNSTMAAKAEVVAEALS-------------------KHAV-DNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            ++ A +    ++S+SRK+K E   SS +STMAA  ++  E                      +HAV D+PD    E+A +V+MS +N T RRKLG+FSCGTGNPIDDCWRCD NWHKNRKRLADCGIGFGRNAIGGRDGRFY+VTDP D+D VNPKPGTLRHAVIQ++PLWIVFKRDMVI+LKQELI+NSFKTID RG+NVHIANG CITIQF+TNVIIHGLH+HDCKPTGNAMVRSSP+H+GWRT+ADGDA+SIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI
Sbjct:   20 ALTAMIFRNSEISLSRKLKTEVIQSSNSSTMAAIRKLKTEEFQSLNSSTMAATRLDGEPQQQQHAVADDPDMVADEVAKLVQMSEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFYIVTDPTDEDVVNPKPGTLRHAVIQEEPLWIVFKRDMVIELKQELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDAVSIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 304          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL8_ARATH (Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 5.314e-113
Identity = 186/222 (83.78%), Postives = 205/222 (92.34%), Query Frame = 3
Query:  111 EALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            E   +HAV+NPDE+A+MV+MS RNSTERR+LGYFSC TGNPIDDCWRCD  W   RKRLADC IGFGRNAIGGRDGRFYVVTDP DDDPVNP PGTLRHAVIQD+PLWI+FKRDMVI LKQELI+NSFKTIDGRG NVHIANG C+TIQ+VTN+I+HG+HVHDCKPTGNAMVRSSP+HYG+R++ADGDAISIFGSSHIWIDHNSLS+CADGLVDAVM STAI
Sbjct:   29 ETWHEHAVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRFYVVTDPGDDDPVNPIPGTLRHAVIQDEPLWIIFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVTNIIVHGIHVHDCKPTGNAMVRSSPSHYGFRSMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMSSTAI 250          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL20_ARATH (Probable pectate lyase 20 OS=Arabidopsis thaliana GN=At5g48900 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.916e-111
Identity = 180/222 (81.08%), Postives = 203/222 (91.44%), Query Frame = 3
Query:  111 EALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            E   +HAV+NP+E+A+MV+MS RNST RR+LGYFSC TGNPIDDCWRCD  W   RK LA+C IGFGRNAIGGRDGR+YVV+DP DD+PVNPKPGTLRHAVIQ++PLWIVFKRDMVI LK+ELI+NSFKTIDGRG NVHIANG CITIQFVTN+IIHG+H+HDC+PTGNAMVRSSP+HYGWRT+ADGD ISIFGSSHIWIDHNSLS+CADGL+DAVM STAI
Sbjct:   30 ETWHEHAVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLANCAIGFGRNAIGGRDGRYYVVSDPNDDNPVNPKPGTLRHAVIQEEPLWIVFKRDMVITLKEELIMNSFKTIDGRGVNVHIANGACITIQFVTNIIIHGIHIHDCRPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLIDAVMASTAI 251          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL10_ARATH (Probable pectate lyase 10 OS=Arabidopsis thaliana GN=At3g24670 PE=2 SV=2)

HSP 1 Score: 398.282 bits (1022), Expect = 2.469e-110
Identity = 184/241 (76.35%), Postives = 211/241 (87.55%), Query Frame = 3
Query:   54 MKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            + + SS NS+ A K      A ++HAV NP+E+A+MV+M  +NSTERR+LG+FSC TGNPIDDCWRCD NWH  RKRLA+C IGFGRNAIGGRDGR+YVVTDP D D VNP+PGTLRHAVIQD+PLWIVFKRDMVI L QELI+NSFKTIDGRG NV IA G CITIQ+VTN+IIHG++VHDC+ TGNAMVRSSP+HYGWRT+ADGDAISIFGSSHIWIDHNSLS+CADGL+DA+MGSTAI
Sbjct:   34 LNSHSSSNSSTANKLPNDDGAWNEHAVKNPEEVAAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLANCAIGFGRNAIGGRDGRYYVVTDPSDHDAVNPRPGTLRHAVIQDRPLWIVFKRDMVITLTQELIMNSFKTIDGRGVNVAIAGGACITIQYVTNIIIHGINVHDCRRTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLIDAIMGSTAI 274          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL14_ARATH (Putative pectate lyase 14 OS=Arabidopsis thaliana GN=At4g13210 PE=2 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.689e-106
Identity = 174/219 (79.45%), Postives = 198/219 (90.41%), Query Frame = 3
Query:  123 KHAVDNPDEIASMVEMSTRNSTERRKLGYFS-CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            +HAV +P+EIA+MV+MS RNST RRKLG+FS C TGNPIDDCWRCD  WH+ RKRLADC IGFGRNA+GGRDGR+Y+VTDP D DPV PKPGTLR+AVIQD+PLWIVFKRDMVI L QELI+NSFKTIDGRG NVHIA G C+T+Q+VTN+IIHG+++HDCK TGNAMVRSS +HYGWRT+ADGD ISIFGSSHIWIDHNSLS CADGL+DA+MGSTAI
Sbjct:   34 EHAVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGRDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDGRGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIFGSSHIWIDHNSLSSCADGLIDAIMGSTAI 252          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL9_ARATH (Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 5.159e-100
Identity = 178/261 (68.20%), Postives = 211/261 (80.84%), Query Frame = 3
Query:   15 SVRNEQDVSVSRKMKAESSMN---STMAAKAEVVAEALSKHAVDNPD----EIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            ++RN + +S SRK+K E S +   S M  + + V E L++HAV +PD    E+++++ MS +N T RRKLG+FSCG GN IDDCWRCD NW+KNRK LADCG+GFG  A GGR+G +YVVTD  DDD VNPKPGTLRHAVIQ +PLWI+FKRDMVI+LKQELI+NSFKTID RGANVHIANG CITIQ +TNVI+HGLH+HDCK TGN  VRSSP+  G+R  ADGDAI+IFGSSHIWIDHNSLS+C DGLVD V GSTAI
Sbjct:   28 NLRNNE-ISRSRKLKTEDSKSFNSSPMTTRLDGVVE-LNEHAVTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWNKNRKHLADCGMGFGSKAFGGRNGSYYVVTDHSDDDVVNPKPGTLRHAVIQVEPLWIIFKRDMVIKLKQELIMNSFKTIDARGANVHIANGACITIQNITNVIVHGLHIHDCKRTGNVTVRSSPSQAGFRGTADGDAINIFGSSHIWIDHNSLSNCTDGLVDVVNGSTAI 286          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL22_ARATH (Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.650e-96
Identity = 155/215 (72.09%), Postives = 183/215 (85.12%), Query Frame = 3
Query:  132 VDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            V +P+ +   V      S  RRKLG+FSCG+GNPIDDCWRCD +W KNRKRLADCGIGFG+NAIGGRDG  YVVTDP +DDPVNP+PGTLR+AVIQD+PLWI+FKRDM IQLK+ELI+NSFKT+DGRGA+VHI+ G CITIQ+VTN+IIHGLH+HDCK  GN  VR SP HYG+RTV+DGD +SIFG SH+W+DH SLS+C DGL+DA+ GSTAI
Sbjct:   50 VSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPRPGTLRYAVIQDEPLWIIFKRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLHIHDCKQGGNTYVRDSPEHYGYRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAI 264          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL18_ARATH (Probable pectate lyase 18 OS=Arabidopsis thaliana GN=At4g24780 PE=2 SV=2)

HSP 1 Score: 343.584 bits (880), Expect = 7.216e-94
Identity = 152/216 (70.37%), Postives = 184/216 (85.19%), Query Frame = 3
Query:  132 VDNPDEIASMVEMSTRNSTE-RRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            V +P+ +   V  S   S   RRKLGY SC TGNPIDDCWRCD +W ++R+RLADC IGFG+NAIGGRDGR YVVTD  +D+PV+PKPGTLRHAV+QD+PLWI+F+RDM IQLK+ELI+NSFKTIDGRGA+VHI+ G CITIQ+VTN+IIHG+H+HDCK  GNAMVRSSP H+GWRT++DGD +SIFG SH+W+DH S S+C DGL+DA+MGSTAI
Sbjct:   27 VPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLADCAIGFGKNAIGGRDGRIYVVTDSGNDNPVSPKPGTLRHAVVQDEPLWIIFQRDMTIQLKEELIMNSFKTIDGRGASVHISGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHFGWRTISDGDGVSIFGGSHVWVDHCSFSNCEDGLIDAIMGSTAI 242          
BLAST of CB293839 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 3.032e-92
Identity = 149/204 (73.04%), Postives = 177/204 (86.76%), Query Frame = 3
Query:  165 EMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPGTLRHAVIQDKPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHVHDCKPTGNAMVRSSPTHYGWRTVADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAI 776
            E++ + +  RR LG  SCGTGNPIDDCWRCD  W KNR+RLADC IGFG++AIGGRDG+ YVVTD  D D VNPKPGTLRHAVIQD+PLWI+F RDMVI+LK+ELI+NSFKTIDGRGA+VHIA G CIT+Q+VTN+IIHG+++HDCK  GNA VR SP+HYGWRT +DGDA+SIFG SH+W+DH SLS+CADGL+DA+ GSTAI
Sbjct:   39 EVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPGTLRHAVIQDEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGACITVQYVTNIIIHGVNIHDCKRKGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLIDAIHGSTAI 242          
The following BLAST results are available for this feature:
BLAST of CB293839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PEL1_ARATH1.543e-12089.24Probable pectate lyase 1 OS=Arabidopsis thaliana G... [more]
PEL15_ARATH7.923e-11771.58Probable pectate lyase 15 OS=Arabidopsis thaliana ... [more]
PEL8_ARATH5.314e-11383.78Probable pectate lyase 8 OS=Arabidopsis thaliana G... [more]
PEL20_ARATH2.916e-11181.08Probable pectate lyase 20 OS=Arabidopsis thaliana ... [more]
PEL10_ARATH2.469e-11076.35Probable pectate lyase 10 OS=Arabidopsis thaliana ... [more]
PEL14_ARATH3.689e-10679.45Putative pectate lyase 14 OS=Arabidopsis thaliana ... [more]
PEL9_ARATH5.159e-10068.20Probable pectate lyase 9 OS=Arabidopsis thaliana G... [more]
PEL22_ARATH2.650e-9672.09Probable pectate lyase 22 OS=Arabidopsis thaliana ... [more]
PEL18_ARATH7.216e-9470.37Probable pectate lyase 18 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH3.032e-9273.04Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06db06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06db06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293839 ID=CB293839; Name=CB293839; organism=Citrus sinensis; type=EST; length=776bp
GCAGCGTTCTGGCTTCTGTACGTAACGAGCAAGACGTCTCTGTTTCCAGG
AAGATGAAGGCAGAGAGCTCAATGAACTCAACAATGGCGGCCAAGGCTGA
AGTAGTAGCCGAGGCCTTGAGTAAACATGCAGTTGATAACCCAGATGAAA
TTGCTTCAATGGTTGAGATGAGCACCCGCAACAGCACTGAAAGGAGAAAG
TTGGGGTACTTCTCCTGTGGTACTGGTAATCCCATTGATGACTGCTGGCG
CTGTGACGGCAACTGGCACAAGAACCGCAAGCGTCTTGCAGACTGTGGGA
TTGGTTTTGGAAGAAATGCCATTGGTGGCCGTGATGGTCGCTTCTATGTT
GTCACTGACCCAAGGGATGATGACCCTGTTAACCCCAAACCTGGAACTTT
ACGCCATGCTGTTATCCAGGATAAGCCTCTCTGGATTGTTTTCAAGAGGG
ACATGGTGATTCAATTGAAACAGGAACTGATTGTCAATAGCTTCAAGACC
ATTGATGGTCGTGGGGCGAATGTGCACATTGCTAATGGAGGTTGCATCAC
TATCCAATTTGTGACCAATGTGATCATTCACGGTCTTCACGTTCATGACT
GTAAACCCACTGGTAATGCCATGGTTAGGAGCTCACCGACTCACTATGGG
TGGAGGACAGTGGCTGATGGTGATGCCATATCAATTTTTGGCTCTAGCCA
TATATGGATTGATCACAATTCACTCTCCCATTGTGCTGATGGACTTGTTG
ATGCCGTCATGGGATCTACTGCCATT
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