CB293842
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RK28_ARATH (50S ribosomal protein L28, chloroplastic OS=Arabidopsis thaliana GN=RPL28 PE=2 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 2.004e-46 Identity = 101/154 (65.58%), Postives = 115/154 (74.68%), Query Frame = 3 Query: 36 MATMATPGGVLLGNTSNLPCRRPRLXXXXXXXXXXXXEELGFVTSQLSGIKISYRLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRKE 497 M TMAT G L +S + + +ELGF+TSQLSG++ISY DV IS F PG+QPIVARR+CPFTGKK+N+ANKVSFSNHKT K QFVNLQYK+VWWEAGKR+VKLRLSTKALKTIEKNGLDAVAKKA IDLRK+ Sbjct: 1 MTTMATQGAWLRMTSSAKSMTKSTVTS----------KELGFLTSQLSGLRISYTPSDVINRISLPSF-PGIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKK 143
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RK28_TOBAC (50S ribosomal protein L28, chloroplastic OS=Nicotiana tabacum GN=RPL28 PE=1 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 1.941e-41 Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 3 Query: 150 ELGFVTSQLSGIKISYRLPDVATPISSRPFAPGLQPIVARRVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRKE 497 EL FVTSQLSG+KIS ++ S PF P LQP VARR+CPFTGKKSN+ANKVS SNHKT K QFVNLQYK++WWEAGKRYVKLRLSTKA+KTIEKNGLDAVAKKA IDL K+ Sbjct: 37 ELSFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQP-VARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_THEEB (50S ribosomal protein L28 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmB PE=3 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19 Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 RVC TGKK+N A +S S+ +T K Q VNLQ+K+VWW GKR+V+LRLSTKA+KT+E+ GL A AK+A +DL K Sbjct: 3 RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERKGLSAFAKEAGLDLNK 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_CYAP4 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmB PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19 Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 RVC TGK++N A VS S+ +T K Q VNLQ+K++WW GKR+V+LRLSTKALKT+E GLD+ A++A IDL K Sbjct: 3 RVCQLTGKRANNAYAVSHSHRRTKKLQEVNLQWKRIWWPQGKRWVRLRLSTKALKTLEHKGLDSFAREAGIDLNK 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_SYNP2 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpmB PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19 Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 R C TGKK+N A VS S+ +T K Q VNLQ+K+VWW G R+V+LRLSTKA+KT+EK G+DA+A++A I+L K Sbjct: 3 RKCQITGKKANNAMAVSHSHRRTKKLQEVNLQWKRVWWPEGNRFVRLRLSTKAIKTLEKKGIDAMAREAGINLNK 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_CYAP7 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 7424) GN=rpmB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18 Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 R C TGKK+N A +S S+ +T + Q NLQ+K++WWE GKR+VKLRLSTKA+KT+EK GL ++AK+A I+L + Sbjct: 3 RHCELTGKKANNAFSISHSHRRTKRLQHANLQWKRIWWEEGKRWVKLRLSTKAIKTLEKKGLASMAKEAGINLNQ 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_SYNP6 (50S ribosomal protein L28 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17 Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 RVC TGKK+N A +S S+ +T + Q VNLQ K++WW G R+VKLRLSTKA+KT++K GL A A++ IDL++ Sbjct: 3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKKGLSAYARELGIDLKR 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_SYNE7 (50S ribosomal protein L28 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17 Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 RVC TGKK+N A +S S+ +T + Q VNLQ K++WW G R+VKLRLSTKA+KT++K GL A A++ IDL++ Sbjct: 3 RVCQLTGKKANNAYAISHSHRRTKRLQNVNLQEKRIWWPEGNRFVKLRLSTKAIKTLQKKGLSAYARELGIDLKR 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_TRIEI (50S ribosomal protein L28 OS=Trichodesmium erythraeum (strain IMS101) GN=rpmB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17 Identity = 42/75 (56.00%), Postives = 55/75 (73.33%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 R C TGKK+N VS S+ +T K Q NLQ+KKVWW GK++VKL+LSTKA+KT++ G+ A+AK+A IDL K Sbjct: 3 RKCQLTGKKANNGYSVSHSHIRTHKLQHANLQWKKVWWPQGKKWVKLKLSTKAIKTLQSKGIQAMAKQAGIDLNK 77
BLAST of CB293842 vs. ExPASy Swiss-Prot
Match: RL28_CYAP8 (50S ribosomal protein L28 OS=Cyanothece sp. (strain PCC 8801) GN=rpmB PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 3 Query: 270 RVCPFTGKKSNKANKVSFSNHKTTKRQFVNLQYKKVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKARIDLRK 494 R C TGKK+N A VS S+ +T K Q NLQ+K+VWW G R+V+LRLSTKA+KT+E GL +AK+A I+L K Sbjct: 3 RKCQLTGKKANNAYAVSHSHRRTKKLQEANLQWKRVWWPEGNRWVRLRLSTKAIKTLETKGLSVMAKEAGINLNK 77 The following BLAST results are available for this feature:
BLAST of CB293842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293842 ID=CB293842; Name=CB293842; organism=Citrus sinensis; type=EST; length=680bpback to top |