CB293879

Overview
NameCB293879
Unique NameCB293879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig755 contig Csv1_Contig755:139..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.634e-52
Identity = 110/252 (43.65%), Postives = 154/252 (61.11%), Query Frame = 1
Query:   19 EVFELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK---SGLKHAA 765
            E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGRVANRI  G+F++DG EY LPIN+ PNSLHGGF+GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S +I DH + I      PVD+  +PTG I PV+GT FD     ++G  +      G+DHN+ L   +EK   + + HAA
Sbjct:   20 EKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGRVANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTPQVLSNG----VQFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPDIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKESKEKKFCARVHHAA 264          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 110/252 (43.65%), Postives = 153/252 (60.71%), Query Frame = 1
Query:   19 EVFELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK---SGLKHAA 765
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +EK   + + HAA
Sbjct:   20 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----IQFSRISPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQATPVNLTNHSYFNLAGQGSPNIYDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHFCARVHHAA 264          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.358e-52
Identity = 109/242 (45.04%), Postives = 148/242 (61.16%), Query Frame = 1
Query:   19 EVFELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK 744
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  ++ Y++   P+FG +VGRVANRI  G F+LDG EY L IN  PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI PV+GT FD     ++G  + E    G+DHN+ L   +EK
Sbjct:   20 EKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQ-KHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTPRVLSNG----IEFSRVSPDGEEGYPGELKVWVTYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKRSKEK 254          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.610e-52
Identity = 109/252 (43.25%), Postives = 154/252 (61.11%), Query Frame = 1
Query:   19 EVFELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK---SGLKHAA 765
            E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGRVANRI  G+F++ G EY LP+N+ PNSLHGGF GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTG I PV+GT FD     ++G  + +    G+DHN+ L   +EK   + ++HAA
Sbjct:   20 EKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTPQVLTNG----VQFFRVSPDGEEGYPGELKVWVTYTLDGGELV-INYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKESKEKKFCARVRHAA 264          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.255e-51
Identity = 109/242 (45.04%), Postives = 147/242 (60.74%), Query Frame = 1
Query:   19 EVFELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK 744
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGFD +E Y++   P+FG +VGRVANRI  G F+LDG EY L IN  PNSLHGG KGFDKV+W       G    + F   S DGEEGYPG++ V   YTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGEI  V+GT FD     ++G  + E    G+DHN+ L   +EK
Sbjct:   20 EKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQ-KQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSNG----VEFSRVSPDGEEGYPGELKVWVMYTLDGGELV-VNYRA-QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKGSKEK 254          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.639e-51
Identity = 109/252 (43.25%), Postives = 153/252 (60.71%), Query Frame = 1
Query:   19 EVFELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLDCGEEK---SGLKHAA 765
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL     + ++  A   ++ TP++L  H+Y+NLAG  S NI DH + I      PVD+  +PTGE+ PV+GT FD     ++G  + +    G+DHN+ L   +EK   + + HAA
Sbjct:   20 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISPDGEEGYPGELKVWVTYTLDGGELI-VNYRA-QASQATPVNLTNHSYFNLAGQASPNINDHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHFCARVHHAA 264          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.903e-42
Identity = 99/262 (37.79%), Postives = 145/262 (55.34%), Query Frame = 1
Query:   34 NNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAP---FFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAE-YKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNL--AGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINE-----VPGLGYDHNYVLDCGEEKSGLKHAAKLKEPST 786
            NN  + V   ++G +IT +  PD  G   ++VLGFD ++ Y          FG ++GR ANRI + KFSLDG  Y L  N  PNSLH G  GFDK VW+V     KGE    + K  S +G++G+PG + V   Y+L+     +++ +A   ++PT ++L  H+Y+NL  AG++   +LDH +Q+    I   DQN++PTGEI  V GTPFDF   K I   I         G GYD  +V++  + +  L  AA + +P +
Sbjct:   44 NNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFGGLIGRYANRIGNAKFSLDGKTYNLEKNNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKA-KTDQPTVVNLTNHSYFNLSGAGNNPYGVLDHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAIVKDIRANNQQLAYGYGYDQTWVIN-QKSQGKLNLAAIVVDPKS 303          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 82/247 (33.20%), Postives = 127/247 (51.42%), Query Frame = 1
Query:   34 NNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVLDC-GEEKSGLKH 759
            NN  M V + ++GA + S  +P   G+  + +LG  S E Y   AA F G  +GR ANRI + +++ DG   TL  ++  N LHGG +GFDK  W++       +  + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L   G+ K    H
Sbjct:   22 NNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAA-FLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ---NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAH 262          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 82/247 (33.20%), Postives = 127/247 (51.42%), Query Frame = 1
Query:   34 NNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG----ASINEVPGLGYDHNYVLDC-GEEKSGLKH 759
            NN  M V + ++GA + S  +P   G+  + +LG  S E Y   AA F G  +GR ANRI + +++ DG   TL  ++  N LHGG +GFDK  W++       +  + F   S DG++G+PG++     Y LT    + +   A  + KP P+++  H Y+NL G  S ++ +H +QI      PVD+  +P   +  V GT FDF + K I     A  ++    GYDH ++L   G+ K    H
Sbjct:   22 NNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAA-FLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ---NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCPVNMTNHVYFNLDGEQS-DVRNHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAH 262          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_HAEIN (Aldose 1-epimerase OS=Haemophilus influenzae GN=galM PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.825e-26
Identity = 79/241 (32.78%), Postives = 128/241 (53.11%), Query Frame = 1
Query:   34 NNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSG-NILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASI---NEVPGLGYDHNYVLDCGEEK 744
            N   M+V+  ++GA   S  VP  +    +V+LG   V+ Y    + + G  VGR ANRI + +F L+G    L  N+  + LHGG +GFDK  W + E   GEN  + F   S DG++G+PG+V V  TYTLT   +++++   + + K T ++L  HTY+NL     G ++ +H++++      PVD   +P   +  V  T FDF   K I       ++    GYDH+++++   +K
Sbjct:   22 NENGMRVQFMDWGATWLSCKVP-VNDTLREVLLGC-KVDNYPTHQS-YLGASVGRYANRIANAQFELNGELIKLSSNQGKHQLHGG-EGFDKRRWNIQEC--GEN-FVCFSLHSVDGDQGFPGNVDVSVTYTLTGDNSVKIEYAGMCD-KDTALNLTNHTYFNLENAEQGSDVREHTLRLNADFYLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQQATKGYDHSFIVNKAWQK 254          
The following BLAST results are available for this feature:
BLAST of CB293879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GALM_RAT5.634e-5243.65Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_PONAB7.358e-5243.65Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_PIG7.358e-5245.04Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_MOUSE9.610e-5243.25Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_BOVIN1.255e-5145.04Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_HUMAN1.639e-5143.25Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_ACICA6.903e-4237.79Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_SHIFL1.884e-3133.20Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI1.884e-3133.20Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]
GALM_HAEIN1.825e-2632.78Aldose 1-epimerase OS=Haemophilus influenzae GN=ga... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293879 ID=CB293879; Name=CB293879; organism=Citrus sinensis; type=EST; length=808bp
GCCCTTAAGTTAAAACCAGAAGTGTTTGAACTGAACAATGGAACCATGCA
AGTCAAAATTACCAATTATGGAGCCATTATCACCTCACTTTCTGTACCTG
ACAAACATGGAAATTGGGCTGACGTTGTTCTTGGATTCGACTCTGTCGAA
CCATACGTGAAAGGTGCTGCACCTTTTTTTGGCTGCATTGTGGGTAGGGT
TGCTAACAGAATTAAAGATGGGAAGTTTTCTCTCGACGGGGTTGAATACA
CTTTGCCCATCAACAAGCCACCAAACAGTCTCCATGGTGGGTTCAAGGGT
TTTGATAAAGTTGTCTGGGAGGTAGCAGAATATAAGAAAGGTGAAAACCC
TTCCATTACTTTCAAGTATCGCAGCCGTGATGGCGAGGAAGGTTACCCAG
GGGATGTTTCTGTGATGGCAACCTACACACTAACATCAAGCACGACAATG
AGGCTTGACATGGAAGCAGTTCCAGAAAACAAGCCGACCCCAATCAGTTT
AGCTCAACACACGTACTGGAACTTAGCAGGCCATCATTCAGGGAACATAC
TTGACCACTCAATTCAAATATGGGGATCACACATTACTCCTGTAGATCAG
AACACGGTCCCAACTGGAGAAATTATGCCAGTCAAGGGCACCCCTTTTGA
TTTCACCACTGAGAAAAAGATTGGTGCATCAATCAATGAAGTACCTGGTT
TAGGGTATGATCACAACTATGTTCTTGATTGTGGAGAAGAGAAATCAGGT
CTGAAACATGCTGCAAAACTGAAGGAACCATCAACCTCAGGGGGCCTTAA
TTTATGGA
back to top